| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0184 |
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| Symbol | |
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| ID | 5135374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 188150 |
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| End bp | 190204 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640531644 |
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| Product | PAS/GGDEF domain-containing protein |
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| Protein accession | YP_001216147 |
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| Protein GI | 147673182 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGCTC AAACCTCATC TCAGCTCAAG CATTGGTTTG CAAAAATTAC GTCACACAGT
CCGTTCTTTT TTGCAATCCT CAATGATCAA CACCAATACG TGATGGTCAA CGAGCGCTAT
TGTGATATCG CCGGTCTCTC TAGCGAAGAG ATGGTCGGGA TGAGCGATAG TCAGGTTCTG
GGCGAACATT TTTATCGCCA TCTCAAACCG TTTTACGAAC GTGCGTTTAA CAACGAGCAT
ATTGAGTCCG AGCTGACCCT CAGCGAAATC GACCTCGAAA CCAGCTTACA CTTTTCTCTC
TCCCCCATCA TGATCAACGA TCGGGTGCAA TACCTTGTAT TCCACGCGAT TGATACCTCA
GAAAAGCAGA TTTTAGTGCG CTCTCTGGAA GAATCGGAAA GCAAATACGC ACTCCTCACG
ACACTGCTAC CTGATGGTTT AATGATGGTG GAAAATGACT GCATTATTTC TGCCAACCCT
TCCGCTGCAC GTTTACTCGG TTTTGACGAC GCACAAAAAC TGCTCGGAGA AAATCTCTCC
AGACTGTTTA TTGATGAAAA GACCAAAACC GTTTTTTCAT CGCAGTTGGC TTCGCTACTG
ACAGAAAAAC CCTTGGTGTG CTTGACCGGG CCAAGGTGTG GGTTTGAACG GAAAATCCAG
TTACACGCAG GTTGCACCTC TTTACTCGGT AATCAGTCGC AGTTGATCTT ATTGCAAGAT
GCCGATGAAG CCCCAAAACA GTTTTCTGCG ACCACTCAAG TCGATGCGCA TATTGATAGC
CTCACTGGGC TGTATAACCG ACACGGGTTT ACCAAGCGCT TAGAGCAGTG CATCCAAAAT
GAGACGCCTT TGGTTATGCT CTATCTGGAC ATTGATAACT TCAAAAACAT CAATGACTCT
CTCGGCCATC ACATCGGTGA CAAAGTGATT AAAGAGGTGG CGGCACGTTT AAAACGCTTA
CTGCCACAGC AAGCCGTACT TGGCCATTTG GGCGGTGATG AGTTTGGTTT GATCTTGCCG
GAGCCAGAAC ACAACCGCTC TGCAGAAATG TTGGCAGATC GCATTATCTC TTTGATTAAT
CAGCCTTTTG ACCTGCACCA TTTCAGTAAG CGTTTAGCTT GTTCGATTGG CAGCGTGCGT
TATCCCGGTG ACGGCAATGA TGCTCGCGTA TTACTGCAAA ATGCCGATAC CGCGATGTAT
GAGGCTAAAG AGCGCGGTCG CAATCGCCTG ATCAAATTCA ATGATCAGAT GAACAAAGAA
GCGCGGATGC GCCTTTGGTT GGAAATTGAA CTGCAAAAAG CGCTACAACA AAACGGCCTA
GAAGTGTGGT ACCAACCGAA AGTCAACGCG CGTGATTTTA GCATCAATGG CGCAGAAGCC
TTGGTACGCT GGAAACATCC CGTTGAAGGC TATATCAGCC CAGGTGCTTT CATTCCCGTT
GCGGAAAAAG CCGGCTTAAT CGAACATTTG GGTCGCGTGG TTATGCGTGA AGTCTTCGCG
ACCGTCAAGC GCTGGAAGCT ACAAGGCATT TTACCCGGAC GTGTGGCGAT CAACATCTCC
CCCGAGCAGT TTGGCAATCC TCAACTGATT GATTATTTAG AAAAACTACT GCGAACAACT
GGGCTAGATC CCAACAACAT CACATTTGAA CTGACCGAAA GTGCGGTGAT GAGCGATAGT
GAACATACCC AGCAAATGCT CAATGCCATC AAGAAACTCG GCTTCACCTT GTCAATTGAT
GACTTCGGTA CAGGTTACTC GTCGCTGGCT TATTTAGCTC GCTTCCCGAT CGATGAGCTC
AAAATCGACC GCGCGTTTAT CAGTAATATC GACACTCTAC CCAAACAGCT CACGGTGATT
GAAAACATCA TTAATTTGGG GCGCTCACTG AACCTGACCG TAGTTGCAGA AGGAGTAGAA
ACTCAGCAAC AAGCCACTTT ACTCTCCAAC CTAAATTGCC ACTCCATCCA AGGCTTCCAT
TTTTATCGCC CACAACCGAA GCACGAAGTG GAAGAGTTGT TTGCGCAAAA TCGCCGCCAT
CGCAAATCCC TCTAA
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| Protein sequence | MPAQTSSQLK HWFAKITSHS PFFFAILNDQ HQYVMVNERY CDIAGLSSEE MVGMSDSQVL
GEHFYRHLKP FYERAFNNEH IESELTLSEI DLETSLHFSL SPIMINDRVQ YLVFHAIDTS
EKQILVRSLE ESESKYALLT TLLPDGLMMV ENDCIISANP SAARLLGFDD AQKLLGENLS
RLFIDEKTKT VFSSQLASLL TEKPLVCLTG PRCGFERKIQ LHAGCTSLLG NQSQLILLQD
ADEAPKQFSA TTQVDAHIDS LTGLYNRHGF TKRLEQCIQN ETPLVMLYLD IDNFKNINDS
LGHHIGDKVI KEVAARLKRL LPQQAVLGHL GGDEFGLILP EPEHNRSAEM LADRIISLIN
QPFDLHHFSK RLACSIGSVR YPGDGNDARV LLQNADTAMY EAKERGRNRL IKFNDQMNKE
ARMRLWLEIE LQKALQQNGL EVWYQPKVNA RDFSINGAEA LVRWKHPVEG YISPGAFIPV
AEKAGLIEHL GRVVMREVFA TVKRWKLQGI LPGRVAINIS PEQFGNPQLI DYLEKLLRTT
GLDPNNITFE LTESAVMSDS EHTQQMLNAI KKLGFTLSID DFGTGYSSLA YLARFPIDEL
KIDRAFISNI DTLPKQLTVI ENIINLGRSL NLTVVAEGVE TQQQATLLSN LNCHSIQGFH
FYRPQPKHEV EELFAQNRRH RKSL
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