| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0181 |
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| Symbol | vmrA |
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| ID | 5136358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 184746 |
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| End bp | 186086 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640531641 |
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| Product | multidrug efflux pump VmrA |
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| Protein accession | YP_001216144 |
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| Protein GI | 147673240 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 47 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTATGATG AATCGATCGA TTTACCGACA GTTTGTTCGC TACACCATTC CACGGTGGCT
GCGATGCTGG TTAATGGTCT GTATCAAGTG GTGGATGGCA TCTTCATTGG CCATTATGTG
GGCGCTGAGG GATTAGCTGG CATTAACGTG GCTTGGCCTG TGATCGGTAC CATCCTCGGG
ATCGGTATGC TGGTTGGGGT GGGCACTGGA GCTCTGGCTT CAATCAAACA GGGGGAAGGC
CATCCTGACA GTGCTAAGCG TATTCTGGCC ACTGGGTTGA TGAGTTTGCT GCTACTTGCC
CCTATCGTGG CTGTGATTTT GTGGTTTATG GCGGATGACT TCTTGCGTTG GCAAGGCGCT
GAAGGAAGGG TGTTTGAATT AGGCCTGCAG TACCTACAAG TGTTAATTGT TGGCTGTTTG
TTCACCTTAG GCTCGATTGC GATGCCGTTT TTGCTACGTA ACGATCACAG CCCCAATTTG
GCTACGTTAT TAATGGTGAT TGGTGCACTG ACCAATATCG CACTTGATTA CCTGTTTATC
GCTTGGCTGC AATGGGAGCT GACCGGTGCA GCGATCGCCA CCACTCTTGC GCAGGTGGTG
GTCACGTTAT TAGGCTTGGC GTATTTCTTT TCTGCCCGAG CCAATATGCG TTTAACTCGT
CGTTGCTTAA GGTTGGAGTG GCACTCGTTA CCCAAGATCT TCGCGATTGG CGTCTCAAGC
TTTTTTATGT ACGCCTACGG TTCCACCATG GTCGCGCTGC ACAACACCTT GATGATCGAG
TACGGCAACG CCGTCATGGT CGGTGCTTAT GCGGTGATGG GTTACATAGT GACGATCTAC
TACCTGACCG TTGAAGGTAT TGCGAATGGT ATGCAGCCGC TGGCCAGCTA CCATTTTGGG
GCGCGTAATT ACGATCACAT CCGTAAGTTA TTACGCTTGG CGATGGGGAT TGCCGTACTG
GGAGGGATGG CGTTTGTGCT GGTGCTAAAC CTCTTCCCTG AGCAGGCGAT TGCGATATTT
AACTCCAGCG ACAGCGAATT GATCGCCGGA GCGCAAATGG GCATTAAGCT GCACCTGTTT
GCGATGTATC TTGATGGTTT CTTAGTGGTG AGCGCGGCGT ATTACCAATC CACCAATCGC
GGTGGCAAAG CCATGTTTAT TACCGTGGGG AATATGTCGA TCATGTTACC CTTCTTGTTT
ATTTTGCCGC AGTTTTTTGG GCTGACAGGG GTATGGATCG CCTTACCCAT CTCCAATATT
GTGCTGAGCA CTGTGGTCGG CATTATGCTC TGGCGCGATG TGAACAAAAT GGGGAAACCT
ACCCAAGTTT CCTATGCATG A
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| Protein sequence | MYDESIDLPT VCSLHHSTVA AMLVNGLYQV VDGIFIGHYV GAEGLAGINV AWPVIGTILG
IGMLVGVGTG ALASIKQGEG HPDSAKRILA TGLMSLLLLA PIVAVILWFM ADDFLRWQGA
EGRVFELGLQ YLQVLIVGCL FTLGSIAMPF LLRNDHSPNL ATLLMVIGAL TNIALDYLFI
AWLQWELTGA AIATTLAQVV VTLLGLAYFF SARANMRLTR RCLRLEWHSL PKIFAIGVSS
FFMYAYGSTM VALHNTLMIE YGNAVMVGAY AVMGYIVTIY YLTVEGIANG MQPLASYHFG
ARNYDHIRKL LRLAMGIAVL GGMAFVLVLN LFPEQAIAIF NSSDSELIAG AQMGIKLHLF
AMYLDGFLVV SAAYYQSTNR GGKAMFITVG NMSIMLPFLF ILPQFFGLTG VWIALPISNI
VLSTVVGIML WRDVNKMGKP TQVSYA
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