| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0178 |
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| Symbol | pnp |
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| ID | 5135826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 181032 |
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| End bp | 183170 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640531638 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001216141 |
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| Protein GI | 147674727 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGAAA AACCAGTAGT AAAAACGTTT CAGTACGGTA ACCACACCGT TACTCTCGAA
ACGGGTGTAA TGGCTCGCCA AGCAACGGCA GCAGTAATGG CTACCATGGA TGACACTGCG
GTGTTTGTCT CTGTGGTCGG TAAGAAAGAA GCGGTAGTGG GTCAAGATTT CTTCCCTCTG
ACTGTAAACT ACCAAGAGCG TACTTACGCG GCAGGTAAAA TCCCTGGCGG TTTCTTTAAG
CGCGAAGGCC GTCCTTCTGA AGGCGAAACG CTGATTGCTC GTCTGATTGA CCGTCCAATT
CGTCCGCTGT TCCCTGATGG TTTCACTAAC GAAGTGCAAG TGATCGCGAC TGTGGTTTCA
GTAAACCCAG ACGTGCAACC TGACATCATC TCGATGATCG GTACTTCTGC AGCACTGGCG
ATTTCTGGAC TCCCATTCAA TGGTCCAATC GGTGCGGCTC GCGTAGGTCA CATTGATGGT
CAATTGGTTC TGAACCCAAG TGAAAAAGAG CTGAAACAGT CTCGTTTGGA TCTGGTGGTT
GCGGGTACTG ACAACGCAGT ACTGATGGTG GAATCAGAAG CACAAATTCT GACTGAAGAA
GAGATGCTGG CTGCCGTTGT GTTTGGTCAT GATCAACAAC AAGCCGTGAT CAAAGCAATC
AATGAATTCG CAGCGGAAGT GGCAACACCA GCATGGGAAT GGGTTGCACC AGCCGAGAAC
ACTGAGCTGA AAGCGAAAGT GGCTGCTCTG GCAGAAACTC GTTTGGTGGA AGCGTACCAA
ATCACTGAGA AAATGGCGCG TTATGATCGT ATCCATGCAA TCAGTTCAGA AGTGACGGCG
GCTCTGCTGG CTGAAAACGA AGCTTTAGAC ACCAAAGAAA TTCACACCAT TTTCCACGAT
CTGGAAAAAA CCGTTGTTCG TCGCAGCATC ATCGCGGGTA ACCCACGTAT CGATGGCCGT
GAAAAAGACA TGGTTCGTGC TCTGGACGTT CGTACTGGCG TTCTACCACG TACTCACGGC
TCTGCTCTGT TCACACGTGG TGAAACTCAG GCTCTGGTTA CAGCAACTCT AGGCACTCAA
CGTGATGCGC AAATCATCGA TGAGCTGACT GGCGAGAAGA AAGATCACTT CCTACTGCAC
TACAACTTCC CTCCATACTG TGTGGGTGAA ACGGGTTTTG TGGGTTCTCC TAAGCGTCGT
GAAATCGGTC ACGGCCGTTT GGCGAAGCGT GGTATTGCTG CGGTTATGCC ATCACCAGAA
GAGTTCCCGT ACACAGTTCG TGTCGTTTCT GAAATCACGG AATCTAACGG TTCATCTTCA
ATGGCTTCTG TGTGTGGTTC ATCGCTTGCT CTGATGGATG CTGGTGTTCC AATCAAGGCT
TCTGTTGCGG GTATCGCAAT GGGTCTGGTG AAAGAAGAAA ATGATTTTGT GGTTCTGTCT
GACATTCTGG GTGATGAAGA TCACCTAGGC GACATGGACT TTAAAGTCGC AGGTACCGCG
ACAGGTGTTA CTGCACTGCA GATGGACATC AAGATCGAAG GCATCACCAA AGAGATCATG
CAAATCGCTC TGAACCAAGC GAAAGGTGCT CGTCTACACA TTCTGTCTGT GATGGATCAA
GCGATCTCTG CAGCGCGTAG CGATATCTCT GAATTTGCGC CACGTATCCA CACGATGAAG
ATCAGCGTTG AGAAGATCAA AGACGTGATC GGTAAAGGTG GTGCGGTAAT TCGTCAGTTG
ACGGAAGAAA CGGGTACCAC CATCGAGATC GAAGATGACG GCACGATCAA GATTGCTGCG
ACTGACGGCG ATCAAGCGAA AGAAGCGATC CGCCGTATTC AAGAGATCAC CGCCGAAGTT
GAAGTGGGCG TGATCTACAC TGGTAAAGTA GCTCGTTTGG CAGACTTTGG TGCGTTTGTA
ACGATTCTTC CTGGTAAAGA TGGTCTAGTA CACATCTCTC AAATCGCTGA CAAGCGCGTA
GAGAAAGTGT CTGACTACCT GACTGAAGGC CAAGAAGTTC AAGTTAAAGT GCTGGAAATC
GACCGCCAAG GCCGTGTACG TCTAAGCATG AAAGAAGCGG TTGAAACTTC TGATGCAGCA
GCAGAAGTGG CACCACAAGC GGCACCACAA GCGGAATAA
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| Protein sequence | MFEKPVVKTF QYGNHTVTLE TGVMARQATA AVMATMDDTA VFVSVVGKKE AVVGQDFFPL
TVNYQERTYA AGKIPGGFFK REGRPSEGET LIARLIDRPI RPLFPDGFTN EVQVIATVVS
VNPDVQPDII SMIGTSAALA ISGLPFNGPI GAARVGHIDG QLVLNPSEKE LKQSRLDLVV
AGTDNAVLMV ESEAQILTEE EMLAAVVFGH DQQQAVIKAI NEFAAEVATP AWEWVAPAEN
TELKAKVAAL AETRLVEAYQ ITEKMARYDR IHAISSEVTA ALLAENEALD TKEIHTIFHD
LEKTVVRRSI IAGNPRIDGR EKDMVRALDV RTGVLPRTHG SALFTRGETQ ALVTATLGTQ
RDAQIIDELT GEKKDHFLLH YNFPPYCVGE TGFVGSPKRR EIGHGRLAKR GIAAVMPSPE
EFPYTVRVVS EITESNGSSS MASVCGSSLA LMDAGVPIKA SVAGIAMGLV KEENDFVVLS
DILGDEDHLG DMDFKVAGTA TGVTALQMDI KIEGITKEIM QIALNQAKGA RLHILSVMDQ
AISAARSDIS EFAPRIHTMK ISVEKIKDVI GKGGAVIRQL TEETGTTIEI EDDGTIKIAA
TDGDQAKEAI RRIQEITAEV EVGVIYTGKV ARLADFGAFV TILPGKDGLV HISQIADKRV
EKVSDYLTEG QEVQVKVLEI DRQGRVRLSM KEAVETSDAA AEVAPQAAPQ AE
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