| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0176 |
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| Symbol | truB |
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| ID | 5135654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 179320 |
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| End bp | 180258 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640531636 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001216139 |
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| Protein GI | 147675140 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.721931 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTCGTC GACGTAAAGG TCGGGTTATC CACGGTGTGA TTCTGTTGGA TAAGCCGACA
GGTATCTCTT CCAACGACGC TTTGCAAAAG GTTAAACGCC TCTATGGCGC TGAAAAAGCG
GGACATACTG GCGCGCTTGA TCCTCTGGCG ACGGGCATGT TGCCAATCTG CCTCGGTGAA
GCCACTAAGT TTTCCCAATT TCTGCTCGAT TCTGATAAAC GTTATCGTGT GATCGCCAAA
TTGGGTGAAC GTACCGACAC CTCAGATTCT GATGGTCAAG TGGTACAAAC GCGTCCTGTT
CACGTGGATT ACGATACGCT GCTGGCCTGT ATCGCCAAGT TTCGCGGTGA AACGGATCAA
GTTCCATCCA TGTTTTCAGC GTTGAAATAC CAAGGTCGTC CACTCTACGA ATACGCCCGT
CAGGGTATTG AAGTGCCGCG TGAAGCGCGC AAGATCACTG TGTATGAGAT TGAGCTGCAT
CGCTTTGAAG GTGATGAAGT GGAGATGGAA GTACACTGCT CGAAAGGCAC TTATATTCGT
ACCATAGTCG ATGATCTGGG TGAAATGCTG GGCTGTGGAG CGCATGTGAC CATGCTGCGC
CGTGTGGGTG TCGCTAACTA TCCGTATGAG CGAATGGTGA CGCTAGAGCA ACTCAACGCT
TTGGTTGAAC AAGCCCATCG TGACGAAAAA GCGGTGGCGG ACGTTCTCGA TCCGCTATTA
CTGCCGATGG ATACTGCCGT GGAAGCTTTA CCCGAAGTCA ACGTGATCCC AGAACTGATG
ACACTTATTC AGCATGGGCA AGCAGTACAG GTTTCGGGGG CACCATCCGA CGGTATGGTG
CGCATTACTG GCGGCGAGCA GAAGCTATTC CTTGGCGTTG GCGAGATTGA CGATAACGGT
AAGGTCGCGC CGAAACGCTT GGTGGTGTAC GGCGAATAA
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| Protein sequence | MVRRRKGRVI HGVILLDKPT GISSNDALQK VKRLYGAEKA GHTGALDPLA TGMLPICLGE
ATKFSQFLLD SDKRYRVIAK LGERTDTSDS DGQVVQTRPV HVDYDTLLAC IAKFRGETDQ
VPSMFSALKY QGRPLYEYAR QGIEVPREAR KITVYEIELH RFEGDEVEME VHCSKGTYIR
TIVDDLGEML GCGAHVTMLR RVGVANYPYE RMVTLEQLNA LVEQAHRDEK AVADVLDPLL
LPMDTAVEAL PEVNVIPELM TLIQHGQAVQ VSGAPSDGMV RITGGEQKLF LGVGEIDDNG
KVAPKRLVVY GE
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