| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0162 |
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| Symbol | ompU |
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| ID | 5135833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 165614 |
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| End bp | 166666 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640531622 |
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| Product | outer membrane protein OmpU |
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| Protein accession | YP_001216127 |
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| Protein GI | 147674883 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000000502396 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAATA AATTAGGACT TAATAAGATG AACAAGACTC TGATTGCTCT TGCTGTATCA
GCTGCTGCAG TGGCTACTGG CGCTTACGCT GACGGAATCA ACCAAAGCGG TGACAAAGCA
GGTTCAACCG TTTACAGCGC GAAAGGTACT TCTCTAGAAG TTGGTGGCCG TGCTGAAGCT
CGCCTATCTC TGAAAGATGG TAAGGCACAA GACAACTCTC GCGTACGTCT AAACTTCTTG
GGTAAAGCAG AAATCAATGA CAGCCTATAC GGTGTTGGTT TCTACGAAGG CGAGTTTACT
ACTAATGATC AAGGTAAAAA CGCGTCTAAC AACAGCCTAG ACAACCGTTA TACCTACGCT
GGTATCGGTG GCACTTACGG TGAAGTGACT TACGGTAAAA ACGATGGCGC ATTGGGCGTA
ATCACTGACT TCACCGATAT CATGTCTTAC CACGGTAACA CAGCCGCAGA AAAAATTGCT
GTAGCAGACC GTGTTGACAA CATGCTGGCT TACAAAGGCC AATTTGGTGA CCTAGGCGTA
AAAGCAAGCT ACCGTTTTGC TGACCGTAAC GCTGTTGACG CAATGGGTAA TGTTGTAACT
GAAACAAACG CTGCCAAGTA CTCTGACAAC GGTGAAGATG GTTACTCTCT GTCTGCTATC
TACACTTTCG GTGACACTGG CTTTAACGTA GGTGCTGGCT ACGCAGATCA AGACGATCAA
AACGAATACA TGCTAGCCGC TTCTTACCGC ATGGAAAACC TGTACTTCGC AGGACTGTTC
ACTGACGGTG AGCTAGCGAA AGACGTTGAC TACACTGGCT ACGAGCTAGC TGCTGGTTAC
AAACTAGGTC AAGCTGCGTT TACTGCGACA TACAACAATG CAGAAACAGC GAAAAAAACT
TCAGCAGATA ATTTTGCTAT CGACGCAACT TACTACTTCA AGCCAAACTT CCGCTCTTAC
ATCTCTTACC AGTTCAATCT GCTAGATTCA GACAAAGCTA GTAAAGTAGC ATCAGAAGAC
GAACTGGCTA TCGGTCTACG TTACGACTTC TAA
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| Protein sequence | MDNKLGLNKM NKTLIALAVS AAAVATGAYA DGINQSGDKA GSTVYSAKGT SLEVGGRAEA
RLSLKDGKAQ DNSRVRLNFL GKAEINDSLY GVGFYEGEFT TNDQGKNASN NSLDNRYTYA
GIGGTYGEVT YGKNDGALGV ITDFTDIMSY HGNTAAEKIA VADRVDNMLA YKGQFGDLGV
KASYRFADRN AVDAMGNVVT ETNAAKYSDN GEDGYSLSAI YTFGDTGFNV GAGYADQDDQ
NEYMLAASYR MENLYFAGLF TDGELAKDVD YTGYELAAGY KLGQAAFTAT YNNAETAKKT
SADNFAIDAT YYFKPNFRSY ISYQFNLLDS DKASKVASED ELAIGLRYDF
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