| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0152 |
|---|
| Symbol | |
|---|
| ID | 5135615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 153712 |
|---|
| End bp | 154797 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640531612 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_001216117 |
|---|
| Protein GI | 147673733 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGAAA AAATCAAATT AGCATCCAGT CATCGCGTAT TAGTTGTGGC GCTGCTCGCT
TCTGCACTCG CGTGTTACTG GTTGGTCGAG CCTTACATCA ACTCGATAAT AATGGCCTTC
ATCATTTCGC TCTTGATGTT TCCAATCCAT GATTGGTTTG AAAAGAAACT GCCTTCACAC
AACAATTTAG CGGCCTTTTT ATCTTGTGTT GTGCTAACCG TTATCATCGT TATTCCCCTA
CTGTTTATTT TTGGGGCCAT CGTTCAACAA GGCTCTAAGT TCTCACAAAA CCTCTACGCA
TGGGTTACAC AAGGCGGAAT TCAGGCTCTC TTTAACCATC CTTGGGTGGT CAAAGGGCTC
AGCTTAGCCA ATCACTATCT GCCTTTTGAA GAGATCAGCC CCCAACAAAT CGCACAACGC
ATTGGTCAGT TTGCAACCAC ATTCGGCAGT AATTTAGTCA GTATTAGCGC AAAAATTCTC
GGGGATGCCA CCAGCTTCGT GATGCATTTT TTCCTGATGC TGTTTGTGCT GTTCTTCCTA
CTGCGCGATC ACGACAAAAT CATCAGTGCG ATTCGCCATA TTCTGCCCCT CTCTCGCAGC
CAAGAAGATC GCCTGCTCAG CGAGATAGAA AATGTCTCCA AATCAGCGGT GATGGGCTCT
TTTTTAACCG CCATCGCGCA AGGTGTGGCA GGCGGAATTG GCATGTGGCT GGCGGGTTTC
CCGGGACTGT TTTGGGGAAC CATGATGGGC TTTGCGTCCT TTATCCCCGT CGTCGGTACT
GCGTTAATTT GGATCCCTGC GACACTCTAT CTATTTTTAA CCGGTGATAC GACTTGGGCG
ATTTTCCTCG CCATTTGGAG TGTTGCGGTT GTGGGCTCGA TTGATAACTT ACTCCGCCCC
TTCTTAATGC AAGGCAGTGC AGGGATGAAT ACCTTGATGA TTTTCTTCTC CCTGCTCGGC
GGTATTCAGT TGTTTGGTTT AATTGGCTTA ATTTATGGCC CGCTGATTTT TGCCATCACC
ATGGTGCTGT TTAATATCTA CGAAGAAGAG TTTCGCAGCT TTTTAGATCA GCAAGACCGA
AGCTAA
|
|---|
| Protein sequence | MSEKIKLASS HRVLVVALLA SALACYWLVE PYINSIIMAF IISLLMFPIH DWFEKKLPSH
NNLAAFLSCV VLTVIIVIPL LFIFGAIVQQ GSKFSQNLYA WVTQGGIQAL FNHPWVVKGL
SLANHYLPFE EISPQQIAQR IGQFATTFGS NLVSISAKIL GDATSFVMHF FLMLFVLFFL
LRDHDKIISA IRHILPLSRS QEDRLLSEIE NVSKSAVMGS FLTAIAQGVA GGIGMWLAGF
PGLFWGTMMG FASFIPVVGT ALIWIPATLY LFLTGDTTWA IFLAIWSVAV VGSIDNLLRP
FLMQGSAGMN TLMIFFSLLG GIQLFGLIGL IYGPLIFAIT MVLFNIYEEE FRSFLDQQDR
S
|
|---|
| |