Gene VC0395_A0146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0146 
Symbol 
ID5137647 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp143269 
End bp144252 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content48% 
IMG OID640531606 
Productpeptide ABC transporter, ATP-binding protein 
Protein accessionYP_001216111 
Protein GI147675188 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones66 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTACGC CATTAATCTC AATCCGCAAC TTATGCGTGG ACTACATTAC CGATGCTGGT 
GACGTCCGTG CCTGTAACAA TGTGAGCTTT GATTTAGCCC CCGGCGAGGT GTTTGGCCTT 
GCGGGTGAAT CCGGCTGTGG TAAATCCACC GTTGCCTTCT CGCTGATGCG CCTGCATAAG 
CCGCCCGCGT TCATCACTGG TGGCGAGGTG ATCTTCAACG GTGAAGACAT CCTGAAATAC 
AGTGATGAGC GCATGCAAGC GTTCCGTTGG AAAGAAATGT CGATGGTATT TCAAAGTGCG 
ATGAACGCGC TGAACCCAGT TCTGACCATG GAAGAGCAAT TTTGCGATGT GATCATGCGC 
CATACCAATA TGACGCGTGA ACAAGCCAAA CGTCGTGCTG AAGGGCTGTT AGAAATTGTG 
GATATTCACC CAAGCCGTCT TAACGATTAT CCGCACCAGT TCTCGGGTGG TATGCGTCAA 
CGCTTGGTGA TTGCAATTGC GCTCGCGCTC AATCCAAAAA TGATCATTAT GGATGAACCT 
ACGACCGCGC TAGATGTTGT CGTTCAGCGT GAAATTCTGC AGAAGATCTA CGCACTCAAA 
GAAGAGTTTG GTTTCTCTAT TCTGTTCATT ACTCATGACT TGTCACTGAT GGTCGAGTTC 
TCAGACCGTA TCGGCATCAT GTACTCCGGT GAATTGATTG AAGTGGCTCC TTCAAAACAA 
ATTCTGGAAA CCCCTTACCA CCCTTATACC AAAGGGTTGG GAAGTTCTTT TCCACCATTA 
ACTGGACCAA AAACAAAACT CACAGGGATC CCTGGAAACC CACTCAACCT GTTGGACATT 
CCTCAAGGTT GCCGTTTCCA AGCTCGCTGT GACCGAGTTC ATGAAGCTTG TACTAAGGTA 
CCGACCGTAC TGCGCCAAAT CGAGCATGGC CGCTTTTCTA ACTGCCATCT CTATACGCAA 
TCGAACGCCA CTATAAAACG CTAA
 
Protein sequence
MTTPLISIRN LCVDYITDAG DVRACNNVSF DLAPGEVFGL AGESGCGKST VAFSLMRLHK 
PPAFITGGEV IFNGEDILKY SDERMQAFRW KEMSMVFQSA MNALNPVLTM EEQFCDVIMR 
HTNMTREQAK RRAEGLLEIV DIHPSRLNDY PHQFSGGMRQ RLVIAIALAL NPKMIIMDEP 
TTALDVVVQR EILQKIYALK EEFGFSILFI THDLSLMVEF SDRIGIMYSG ELIEVAPSKQ 
ILETPYHPYT KGLGSSFPPL TGPKTKLTGI PGNPLNLLDI PQGCRFQARC DRVHEACTKV 
PTVLRQIEHG RFSNCHLYTQ SNATIKR