Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0125 |
Symbol | pcnB |
ID | 5137556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 111657 |
End bp | 113030 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640531585 |
Product | polyA polymerase |
Protein accession | YP_001216090 |
Protein GI | 147673822 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
TIGRFAM ID | [TIGR01942] poly(A) polymerase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000000172768 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAATA ACGATTTTGA ACCGAGCAAC ACTCGCACAT ATCCAGACTT AGCTTTGACC ATCATTCCGC GTCAGGAACA CCCTATCTCG CGTCAGCAGA TCAGCGAAAA TGCGCTGAAA GTGCTCTATC GTCTGCATGG TGCGGGGTTT GAGGCCTTTC TGGTCGGCGG CGGTGTGCGT GATTTACTTC TGGGTGGCAA GCCGAAAGAC TTTGATGTGG CCACCAACGC AACCCCCGAG CAGTTACGCC AACTGTTTCG CAACTGCCGT CTGATTGGTC GCCGTTTCCG TCTCGCGCAC ATTATGTTTG GACGCGACAT CGTCGAAGTC GCCACTTTCC GTGGCCATCA TCAAGAGTCG AGTCAGAGCC AAAATATCGC TGCACAATCC GAAGCGGGTA TGCTGCTACG TGATAACATG TACGGCACGA TTGATGAAGA TGCCGAGCGC CGCGATTTCA CCATCAATGC CATGTATTAC AACATTGCAG ACTACAGCAT CCACGACTAT GCCGGCGGCA TGGAAGATCT GGAAGATCGT TTGGTGCGCC TGATTGGCGA TCCGGAAACG CGTTATCGTG AAGATCCGGT ACGCATGCTG CGCGCGGTAC GTTTTGCGGT CAAACTCGAT TTTGATATCG AAGAAGATAC CGCGGCGCCG ATTGAGCAAC TTGCGCCATT GCTGCGTGAC ATCCCTGCGG CTCGTCTCTA CGAAGAATCG CTCAAAATGC TGCAAGCGGG TCATGGTTTA GAAACCTACC ACTTAATGCG TCAATACAAT CTGTTCCAGC AACTTTTCCC AACTATAGCC GAGCATTTTA CTGCCGATCA CAGCTCAAAA ACTGAGCAGA TGTTGGATTT GGTGCTGGAT GCGACCGACA TTCGGGTTGA AGAAGATCTG CGCATCAATC CGGCCTTTAT GTTTGCCGCC ATGCTGTGGT ATCCGATGAT TGATCTCGCG GATCGCTTAA TGGAATCGCT CGATCTCAAT GAGTTTGATG CCATTACCGA AGCCAGCAAC CGCATCTTAG ATGAAGTGGT CAAGCGTATC GCTATTCCGC GCCGCCACAC CACTACAGTT CGTGATATTT GGCAGTTGCA ACAGCGCTTA CCCCGTCGCA GTGGTAAAAG GGCCTTCCGT CTACTTGAAC TGAACAAGTT CCGTGCAGGC TTTGATTTCC TCGAAATGCG TGGCGAAATT GAAGGCGGTG AAACCAAACA ATTAGCGGAA TGGTGGGCCA CCTTCCAAAG CGCGGGACGC AATATGCGCC AAGCCATGGT GGGTGATATC GGTAATGCAA CGGGCAGCAG CAAATCTGGC GCTCGCCGCC GTAAACCATC CCGCAACAAA TCCAAGAGTA AATCCAGCGA ATGA
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Protein sequence | MNNNDFEPSN TRTYPDLALT IIPRQEHPIS RQQISENALK VLYRLHGAGF EAFLVGGGVR DLLLGGKPKD FDVATNATPE QLRQLFRNCR LIGRRFRLAH IMFGRDIVEV ATFRGHHQES SQSQNIAAQS EAGMLLRDNM YGTIDEDAER RDFTINAMYY NIADYSIHDY AGGMEDLEDR LVRLIGDPET RYREDPVRML RAVRFAVKLD FDIEEDTAAP IEQLAPLLRD IPAARLYEES LKMLQAGHGL ETYHLMRQYN LFQQLFPTIA EHFTADHSSK TEQMLDLVLD ATDIRVEEDL RINPAFMFAA MLWYPMIDLA DRLMESLDLN EFDAITEASN RILDEVVKRI AIPRRHTTTV RDIWQLQQRL PRRSGKRAFR LLELNKFRAG FDFLEMRGEI EGGETKQLAE WWATFQSAGR NMRQAMVGDI GNATGSSKSG ARRRKPSRNK SKSKSSE
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