Gene VC0395_A0094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0094 
Symbolffh 
ID5135199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp85450 
End bp86835 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content50% 
IMG OID640531554 
Productsignal recognition particle protein 
Protein accessionYP_001216059 
Protein GI147674906 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0541] Signal recognition particle GTPase 
TIGRFAM ID[TIGR00959] signal recognition particle protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000000225089 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTGAGA ATTTAACCGA TCGATTGTCC AAAACGCTGA AAAATATCAG CGGCAAAGGT 
CGTCTTACTG AAGACAACAT TAAAGATACC CTGCGCGAAG TGCGCATGGC GCTGTTAGAG
GCGGACGTTG CGCTGCCTGT CGTTCGTGAT TTCGTCAATC GCGTTAAAGA AGGCGCGGTG
GGGGTCGAGG TTTCCAAATC TCTGACTCCG GGTCAAGAGT TCATCAAAAT CGTCCGCCAG
CAACTTGAAG CTGTGATGGG CGAATCCAAC GAAGCGTTGA ATCTTGCCGC TCAGCCTCCA
GCGGTTATTT TGATGGCTGG TTTGCAAGGT GCGGGTAAAA CCACATCCGT AGGCAAACTC
TCTAAGCTCC TAAAAGAGCG TGATAAGAAG AAAGTGTTGG TGGTTTCCGC CGACGTGTAT
CGCCCAGCGG CGATCAAGCA GCTCGAAACA TTAGCCAATG ATTTAGGCGT TGATTTCTTC
CCGTCCACAC CGGATCAAAA ACCGATTGAT ATCGCTAACG CTGCAATTGA TCACGCTAAG
AAGAAATTCT ACGACGTACT GATTGTCGAT ACCGCAGGTC GTTTGGCGAT TGATGAGCAG
ATGATGGCGG AGATCCAAGC GCTGCATAAA GCGATCAATC CGGTTGAAAC CCTGTTCGTG
GTCGATGCCA TGACGGGTCA AGATGCCGCC AATACCGCGA AAGCGTTTGG TGATGCATTG
CCACTGACCG GGGTGATTCT AACCAAGGTC GATGGTGATG CCCGTGGCGG TGCGGCGTTG
TCGGTACGCC ATATTACCGG TAAACCGATT AAATTTATCG GTGTCGGCGA GAAAACCGAT
GCCTTAGAGC CTTTCCATCC GGATCGTATT GCTTCACGCA TTCTTGGTAT GGGCGATGTA
CTGTCGCTGA TCGAAGATCT GCAGCGCAAT GTTGACCAAG AGAAAGCCGA AAAACTCGCG
AAAAAATTCA AAGAGAAGAA AGGCTTTGAT TTAGAAGACT TTCGTGAGCA GTTAGGTCAG
ATGAAAAACA TGGGCGGCAT GATGGGGATG CTCGATAAAC TGCCCGGAAT GTCTCAACTG
CCTGCGGATA TGAAAGACAA AGTGGATGAT CGCGTTTTCA AACAGATGGA AGCCATCATC
AACTCAATGA CCATGAAAGA GCGTCAAAAC CCAGACCTCA TCAAAGGCTC ACGCAAAAAG
CGGATTGCTG CGGGTTCCGG TACCCAAGTG CAAGACGTAA ACCGCCTGCT CAAGCAATTT
ACCCAGATGC AGAAGATGAT GAAGAAAATG CAACAAGGTG GCATGAAAGG CATGATGCGT
AACATGCAAG GCCTGATGGG CGGCGGTGGC CGTGGTGGTT TCGGCGGCGG TTTCTTCGGT
CGTTAA
 
Protein sequence
MFENLTDRLS KTLKNISGKG RLTEDNIKDT LREVRMALLE ADVALPVVRD FVNRVKEGAV 
GVEVSKSLTP GQEFIKIVRQ QLEAVMGESN EALNLAAQPP AVILMAGLQG AGKTTSVGKL
SKLLKERDKK KVLVVSADVY RPAAIKQLET LANDLGVDFF PSTPDQKPID IANAAIDHAK
KKFYDVLIVD TAGRLAIDEQ MMAEIQALHK AINPVETLFV VDAMTGQDAA NTAKAFGDAL
PLTGVILTKV DGDARGGAAL SVRHITGKPI KFIGVGEKTD ALEPFHPDRI ASRILGMGDV
LSLIEDLQRN VDQEKAEKLA KKFKEKKGFD LEDFREQLGQ MKNMGGMMGM LDKLPGMSQL
PADMKDKVDD RVFKQMEAII NSMTMKERQN PDLIKGSRKK RIAAGSGTQV QDVNRLLKQF
TQMQKMMKKM QQGGMKGMMR NMQGLMGGGG RGGFGGGFFG R