| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0085 |
|---|
| Symbol | oadA-1 |
|---|
| ID | 5135476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 73431 |
|---|
| End bp | 75224 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640531545 |
|---|
| Product | oxaloacetate decarboxylase |
|---|
| Protein accession | YP_001216050 |
|---|
| Protein GI | 147673995 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG5016] Pyruvate/oxaloacetate carboxyltransferase |
|---|
| TIGRFAM ID | [TIGR01108] oxaloacetate decarboxylase alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0260292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATGT CTAAACCATT AGCCATCACC GATGTCGTCC TACGTGACGC CCACCAATCG
CTCTTTGCTA CGCGTATGCG TATTGAAGAT ATGCTGCCGA TCGCGGCTGA GCTGGATAAA
ATCGGTTACT GGTCGTTGGA AACTTGGGGT GGAGCGACGT TTGATGCTTG CATCCGTTTC
CTTGGCGAAG ATCCATGGGA ACGTCTACGC GCTTTGAAAA AAGCGATGCC GAATACCCCA
ATGCAGATGT TACTGCGCGG CCAAAACTTA CTCGGTTATC GTCATTACGC GGATGATGTC
GTCGAGAAAT TTGTCGAGCG CGCCCATGTC AATGGCATGG ATGTATTCCG TATTTTTGAT
GCGATGAACG ATGTGCGCAA TTTTGAAAAA GCGGTAAAAG CGACGATTGG TGTGGGCGCT
CATGCGCAAG GAACACTCTC TTACACGACG AGCCCTGTGC ACAACACGCA AACTTGGGTG
GATTTAGCAA AACGTCTTGA AGATCTCGGC TGCCACTCTT TATGTATCAA AGACATGTCG
GGTCTGCTCA AACCTTATGA GGCCGAAGAG TTAATCACGC GTATTAAGCA GTCTTGCGCG
GTGCCTTTGG CGCTGCATTG TCACGCGACA ACAGGTTTAT CTACGGCTAC GGCAGTCAAA
GCGGTGGAAG CGGGGATTGA TATTCTTGAT ACCGCGATTT CCTCAATGAG CCAGACTTAT
GGCCATACGC CCACGGAAAC CGTGGTCGCT ATGCTGCAGG ATACACCACG TGATACACAA
CTCAAATTGG AGCAACTTGA ACCGATCGCG GCTTACTTCC GTGAGGTTCG TAAAAAATAC
GCCAAGTTTG AAGGTCAGTT AAAAGGTGTT GATTCGCGCA TTCTGATTGC TCAGGTGCCC
GGCGGCATGC TGACCAATAT GGAAAGCCAG TTGAAAGAGC AAGGTGCCGC GCACCGTATC
GATGAGGTAT TGGAAGAGAT CCCTCGCGTT CGTCAGGATC TTGGGTTTAT TCCGTTAGTG
ACTCCTACCT CGCAGATTGT CGGCACTCAA GCGGTGATCA ACGTGTTAAC CGGTGAGCGC
TATAAGAGCA TTACCAAAGA AACCGCAGGC GTTCTTAAAG GTGAATACGG TGCAACGCCT
GCTAGCGTGA ATGCTGAGCT GCAAGCACGC GTATTAGAAG GTGGACAAGC GATTACTTGT
CGTCCTGCTG ATCTTCTGCA AGATGAACTT GACCATCTCA CTAAAGAGCT GCTTGAAAAA
GCGCAAGTAG AAAAAATCAC CTTAGCGGAT GCGAAGGTCG ATGATGTTCT GACTTATGCG
CTGTTTCCAC AAGTTGGCCT GAAATTCCTG AAAAATCGCC ATAATCCAGA GGCGTTTGAA
CCTGCGCCGG GCAAAGAGCC CGCTCCGGTG GCTACCGCCC CTGCGAGCAC CAAACCTGCA
GCAGGTATCG AGAGCTACAG TGTGAAAGTG GACGGCGTGG TGTATGACGT TGAAGTGGGT
TCACAAGGTC AATTGACCTC AGTGGTACCC GCTGGCCAAA AAGCAGCACC AAAACTGGCT
GTTGCAACAC CCACTCAAGG CGCAGAAGCG GTTGCTGCCC CTTTGGCGGG GACCATCTTT
AAAATCCAAG TTGAACAAGG CGATGAAGTG GCAGAAGGTG ATGTGCTTAT CGTGTTAGAA
GCGATGAAGA TGGAAACTGA AATCCGTGCA GCGCGCAGTG GTGTGATTCA GGAACTGCAT
GTCAAAGAAG GCGACAGCGT TCGCGTTGGC GCCTCACTGC TGAGCTTGGC ATAA
|
|---|
| Protein sequence | MSMSKPLAIT DVVLRDAHQS LFATRMRIED MLPIAAELDK IGYWSLETWG GATFDACIRF
LGEDPWERLR ALKKAMPNTP MQMLLRGQNL LGYRHYADDV VEKFVERAHV NGMDVFRIFD
AMNDVRNFEK AVKATIGVGA HAQGTLSYTT SPVHNTQTWV DLAKRLEDLG CHSLCIKDMS
GLLKPYEAEE LITRIKQSCA VPLALHCHAT TGLSTATAVK AVEAGIDILD TAISSMSQTY
GHTPTETVVA MLQDTPRDTQ LKLEQLEPIA AYFREVRKKY AKFEGQLKGV DSRILIAQVP
GGMLTNMESQ LKEQGAAHRI DEVLEEIPRV RQDLGFIPLV TPTSQIVGTQ AVINVLTGER
YKSITKETAG VLKGEYGATP ASVNAELQAR VLEGGQAITC RPADLLQDEL DHLTKELLEK
AQVEKITLAD AKVDDVLTYA LFPQVGLKFL KNRHNPEAFE PAPGKEPAPV ATAPASTKPA
AGIESYSVKV DGVVYDVEVG SQGQLTSVVP AGQKAAPKLA VATPTQGAEA VAAPLAGTIF
KIQVEQGDEV AEGDVLIVLE AMKMETEIRA ARSGVIQELH VKEGDSVRVG ASLLSLA
|
|---|
| |