| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0062 |
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| Symbol | rpoS |
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| ID | 5136575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 55517 |
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| End bp | 56524 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640531522 |
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| Product | RNA polymerase sigma factor RpoS |
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| Protein accession | YP_001216035 |
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| Protein GI | 147674644 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 57 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGTCA GCAATACCGT AACCAAAGTA GAAGAGTTCG ATTTTGAAGA TGAAGCACTG
GAAGTGCTAG AAACTGATGC CGAGCTCACC AGTGATGAAG AATTAGTTGC TGTTGAAGGG
GCAAGTGAAG ACGTTCGTGA AGAGTTTGAT GCTTCTGCGA AAAGTCTTGA TGCGACCCAG
ATGTATCTCA GCGAAATTGG TTTTTCACCG CTCCTTACTG CCGAAGAAGA AGTGCTTTAT
GCTCGTCGTG CCTTACGTGG TGATGAAGCC GCACGTAAAC GCATGATTGA AAGTAACTTG
CGTCTGGTGG TAAAAATTTC ACGCCGTTAC AGCAACCGAG GATTAGCACT GCTCGATCTG
ATTGAAGAAG GTAATCTTGG TCTGATCCGT GCGGTTGAGA AATTCGATCC AGAACGCGGT
TTCCGCTTCT CTACCTACGC AACATGGTGG ATCCGTCAAA CCATTGAACG TGCGCTGATG
AACCAAACAC GCACCATTCG TCTACCGATT CATGTCGTCA AAGAGCTGAA CATTTATTTG
CGTACTGCTC GCGAATTATC ACAGCGCCTT GACCACGAAC CTACACCAGA AGAAATTGCT
CTTGAGTTAG ACCGACCTGT CGATGATGTC ACTAAGATGC TGCGTCTTAA CGAACGGATC
AGCTCAGTGG ATACGCCAAT TGGTGGGGAT GGAGATAAGG CACTGCTGGA TATTTTGCCA
GACTCTCACA ATGCCGATCC TGAGTTTTCA ACTCAAGATG ATGACATTCG TGAATCGCTG
CTCAACTGGT TGGATGAACT TAATCCAAAG CAAAAAGAAG TGCTTGCGCG TCGCTTTGGG
CTTCTTGGCT ATGAACCATC GACCTTGGAA GAAGTGGGTC GTGAGATCAA TCTCACTCGT
GAGCGTGTTC GCCAAATCCA AGTGGAAGGT CTACGTCGTC TGCGTGAGAT TTTGGTGAAA
CAAGGTTTGA ATATGGAAGC GCTGTTTAGC GTCGAATACG ACAACTAA
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| Protein sequence | MSVSNTVTKV EEFDFEDEAL EVLETDAELT SDEELVAVEG ASEDVREEFD ASAKSLDATQ
MYLSEIGFSP LLTAEEEVLY ARRALRGDEA ARKRMIESNL RLVVKISRRY SNRGLALLDL
IEEGNLGLIR AVEKFDPERG FRFSTYATWW IRQTIERALM NQTRTIRLPI HVVKELNIYL
RTARELSQRL DHEPTPEEIA LELDRPVDDV TKMLRLNERI SSVDTPIGGD GDKALLDILP
DSHNADPEFS TQDDDIRESL LNWLDELNPK QKEVLARRFG LLGYEPSTLE EVGREINLTR
ERVRQIQVEG LRRLREILVK QGLNMEALFS VEYDN
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