| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0061 |
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| Symbol | nlpD |
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| ID | 5137309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 54508 |
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| End bp | 55443 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640531521 |
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| Product | lipoprotein NlpD |
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| Protein accession | YP_001216034 |
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| Protein GI | 147673872 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 59 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGCTTT ACTCTTTCCG ACTGGGCTTA TTATTGTTTT GCAGCTTATT ATTCGGCTGT
ACTGCACCTA CGCCAGCACC AGTCTCTGGA TTGGGTAAAG ATTACAACAA AGTTGAGCGT
GGTAGTTACC GCGGAAGTTA CTATGAAGTT AAAAAAGGCG ACACGCTCTA TTTTATTGCC
TACCTCACAG ATAAAGATGT AAATGATCTG ATCAGTTACA ACGATCTCGC TCCACCTTAC
ACCATTCATC CTGGGCAAAA AATTAAGCTC TGGTTACCTA ATTATACTCC TCCTGCTTAT
GGTGGAACGG GCGGTGCAGC TACCGTGGCT GTGGCTTCAA GCACAAGTGC AAGTGTTGCC
AAAGCGGCGA CGACGGCAAC AGTTGCTCAA ACCGTGAGCA AAAGCTCTAA TACCAAAAAT
GTACAAAATG GGTCAACGAA TAGTCAAAAT TTGACTAAAA AAGATCCAGT TAAGACGGTT
GATCAAACAA AAACAAAGGA GTATGTTGAA CCTGTCGGTA AACAAAATGT TAATGTTAAT
GTAGCAAAAG CTAAACCTTC GGATGAGAAG ATAGCGAAGT GGCTATGGCC GACAAAAGGT
AGAGTCATAA AGAACTTTTC TGCGGGCGAT CAAGGCAACA AAGGGATAGA CATTGCTGGC
CAACGTGGTC AGGCTGTCGT TGCTACTGCA GATGGAACCG TAGTGTATTC GGGCAACGCA
TTACGTGGTT ATGGCAACCT AATCATCATA AAACATAATG AGCACTATTT AAGTGCCTAT
GCCCACAATG ATCAGCTGCT AGCAAAGGAA GGACAAACTG TGCAAGCAGG CCAGAAGATC
GCCACCATGG GAAGTTCTGG TACCAACAGC GTACGCTTGC ACTTTGAGAT CCGTTATCAA
GGGAAGTCAG TGAATCCTAA ACGCTACTTA CCTTAA
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| Protein sequence | MTLYSFRLGL LLFCSLLFGC TAPTPAPVSG LGKDYNKVER GSYRGSYYEV KKGDTLYFIA
YLTDKDVNDL ISYNDLAPPY TIHPGQKIKL WLPNYTPPAY GGTGGAATVA VASSTSASVA
KAATTATVAQ TVSKSSNTKN VQNGSTNSQN LTKKDPVKTV DQTKTKEYVE PVGKQNVNVN
VAKAKPSDEK IAKWLWPTKG RVIKNFSAGD QGNKGIDIAG QRGQAVVATA DGTVVYSGNA
LRGYGNLIII KHNEHYLSAY AHNDQLLAKE GQTVQAGQKI ATMGSSGTNS VRLHFEIRYQ
GKSVNPKRYL P
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