| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0056 |
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| Symbol | ispD |
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| ID | 5136715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 50849 |
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| End bp | 51547 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640531516 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_001216029 |
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| Protein GI | 147673316 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACAACA TGACAGCGAT TGTCCCCGCC GCGGGTGTGG GTCGCCGCAT GCAAGCGGAT
CGCCCTAAGC AGTATTTAAC CTTGCTCGAT AAAACGGTGC TCGAACACAC CGTTGAACAT
CTTTTAGAAC ATCCTCTCAT CGAACACGTG GTAGTGGCGG TGAGTGCTGA TGACCCCTAT
TTTGCGAATT TGCCTCTGGC GCATCATCCG CGTGTGATTC GTGTCGATGG CGGCAAAGAG
CGGGCGGATT CGGTATTGTC GGCACTGGAG TATGTCTGCC AGCATCGCCT CAGTGAATGG
GTATTGGTGC ATGATGCGGC GCGTCCGTGT GTGACTCACG CCGATATCAC TCAGCTCATC
ACCACGGCTT TAGCTCATCC GATTGGTGCG ATTTTGGCCT CGCCCGTGCG GGATACCATG
AAACGTGGCG ATCACTTACA GCAGATTGTG CATACGGTCG ATCGCACTGC GCTCTGGCAT
GCGCTGACAC CGCAAATGTT TCGTGCCCAA TCACTGCGTG AGAGGTTATT CGCCGCTTTA
CAGCAGCAAG TCACGATTAC CGATGAAGCC TCAGCCTTTG AATGGTGTGG TGAAAAGCCT
GCTTTAGTGG CAGGACGTGC CGATAATCTC AAAATTACTC AACCTGAAGA TCTCGCGTTG
GCCGAGTTCT ATTTAAGTCG TAATAAGGAA AAATCATGA
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| Protein sequence | MNNMTAIVPA AGVGRRMQAD RPKQYLTLLD KTVLEHTVEH LLEHPLIEHV VVAVSADDPY
FANLPLAHHP RVIRVDGGKE RADSVLSALE YVCQHRLSEW VLVHDAARPC VTHADITQLI
TTALAHPIGA ILASPVRDTM KRGDHLQQIV HTVDRTALWH ALTPQMFRAQ SLRERLFAAL
QQQVTITDEA SAFEWCGEKP ALVAGRADNL KITQPEDLAL AEFYLSRNKE KS
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