| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0040 |
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| Symbol | |
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| ID | 5135348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 37417 |
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| End bp | 38496 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640531500 |
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| Product | putative extracellular solute-binding protein |
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| Protein accession | YP_001216014 |
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| Protein GI | 147675633 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAATCA CAACCTATTT AAATAAAAGC CGCATCATGC TGGCCCTTGT CCTGAGCACA
GTTTTAGGAA CCGCGCAGGC CAACGAACCA CCCGTTTATA AACTGACGCT GGCCGAAACG
TGGGGGGCGA ATACTCCTAT CCTCGGCGAT GCACCAAAAA ACATGGCGAA ATTGGCCGCT
GAAATGTCCA ATGGCCGCAT TCAAATCCGT ATCGACTCGG CCAACAAACA CAAAGCACCG
CTGGGCGTGT TTGATATGGT GAAATCCGGT CAATACGATC TCGGTCACTC CAGCTCTTAT
TATTGGAAAG GCAAGGTTCC GAATACCCTC TTTTTCTCTT CGATGCCGTT TGGCATGATC
GCAACTGAGC AATACGCTTG GTTCTATTAT GGCGGCGGGA TGCCGTTGAT GGAGAAGGTG
TACGCGCCGC ATAACCTCTT GTCGTTTCCG GGCGGTAACT CAGATATTCA AATGGGCGGA
TGGTTTAAAA AAGAGATCAA CAGCGTTGAC GATCTGCAAG GGCTGAAAAT GCGTATTCCG
GGATTTGCGG GTGAAGTGTT GGCAAAACTT GGCGCGAAAC CCACGAACAT TGCACCGGGG
GAGCTTTATA CCTCGCTAGA ACGCGGCACC ATCGACGCAC TGGAATGGGT TGGCCCAGCC
TTTGATCTGC GCATGGGCTT TCATAAAATT GCCCCTTATT ACTACACCGC ATGGCATGAA
CCGGGCTCCG AAACGCAATT TTTAGTCAAT AAGAAGAAGT GGGATACGCT ACCAAAAGAC
ATCCAAGTGA TCTTAGAAAC CGCTTTCCGC GTCGCCGCTT TCGATATGTA CAACCAAGCG
ATCGATGCGA ATGCGACGAG CTGGGCAGCG ATGAAAAGTG AGTACCCAGA CATCAAAGTT
CGTGATTTTC CACCCGCAGT ACTTGCCGCA CTACGCCAAG CCAACAATGA ACTTCTGCAA
GAGCAGGCAG CAAGCGATCC GCTCGCTAAA GAGATCATCG ACTCTCAGCA GGCTTACTTA
ACCAAAGTGC GTGATTGGAC TCGGATCTCG ACACAAGCGT ACTTAAATAC CAATCCTTAA
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| Protein sequence | MPITTYLNKS RIMLALVLST VLGTAQANEP PVYKLTLAET WGANTPILGD APKNMAKLAA
EMSNGRIQIR IDSANKHKAP LGVFDMVKSG QYDLGHSSSY YWKGKVPNTL FFSSMPFGMI
ATEQYAWFYY GGGMPLMEKV YAPHNLLSFP GGNSDIQMGG WFKKEINSVD DLQGLKMRIP
GFAGEVLAKL GAKPTNIAPG ELYTSLERGT IDALEWVGPA FDLRMGFHKI APYYYTAWHE
PGSETQFLVN KKKWDTLPKD IQVILETAFR VAAFDMYNQA IDANATSWAA MKSEYPDIKV
RDFPPAVLAA LRQANNELLQ EQAASDPLAK EIIDSQQAYL TKVRDWTRIS TQAYLNTNP
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