Gene VC0395_A0039 details

Gene Information

• Locus tag: VC0395_A0039
• Symbol: glmS
• ID: 5135477
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 35524
• End bp: 37356
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640531499
• Product: glucosamine--fructose-6-phosphate aminotransferase
• Protein accession: YP_001216013
• Protein GI: 147675377
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0449] Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains
• TIGRFAM ID: [TIGR01135] glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Plasmid Coverage information

• Num covering plasmid clones: 36
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGTGGAA TTGTTGGTGC GGTTGCACAA CGCGATGTTG CTGAAATTTT AGTACAAGGC 
CTACGCCGTC TTGAATACCG CGGCTATGAC TCTGCGGGCG TAGCTGTTGT GGATAGCGAT 
AAGCAGCTCA CGCGTTTACG CCGTTTGGGT AAAGTACAAG AGTTGGCGGA TGCGGTTGAA 
GCGGCGCAAG TCGCGGGCGG TACAGGTATC GCGCATACCC GTTGGGCAAC GCATGGTGAG 
CCTTCTGAGA TCAATGCTCA CCCCCATATT TCTGGTGACA TTACGGTGGT ACACAACGGC 
ATTATCGAAA ACCATGAAAT GCTGCGTACT ATGCTGCAAG ATCGTGGTTA TGTGTTTACT 
TCACAAACGG ATACTGAAGT CATTGCTCAT TTAGTGGAGT GGGAATTGCG CAGTGCTTCC 
TCTTTATTAG AAGCGGTACA AACCACCGTT AAACAGCTTA CAGGAGCTTA CGGCACTGTG 
GTGATGGATC GTAACGACCC TTCGCGCTTA GTGGTCGCTC GCTCAGGTAG CCCAATTGTG 
ATTGGTTTTG GTATCGGTGA AAACTTCCTT GCGTCAGACC AACTCGCGCT ACTTAACGTC 
ACACGCCGCT TTATGTATCT GGAAGAGGGG GATGTAGCGG AAATGACTCG TCGTGATGTG 
CGCGTATTTG ATGCTCTGGG GCAACCCGTA CAACGTGAAA TCAGCGAATC CAATCTAGAA 
CATGATGCTG CGGACAAAGG TCACTACCGC CACTACATGC AAAAAGAGAT TTTCGAGCAG 
CCAAAGGCGC TGATCAATAC CATGGAAGGG CGTATTACCC ATGACTGCGT GGTGGTGGAA 
AGCATTGGTG TGCACGCGGC AGAGATTCTG GCAAAAGTGG AACATGTACA GATCGTCGCC 
TGCGGTACTT CTTATAATGC AGGGATGACG GCACGTTACT GGTTTGAATC GTTAGCGGGT 
GTGAGCTGTG ATGTCGAAAT CGCGTCTGAA TTCCGCTATC GCAAATTTGT CACGCGCCCC 
AATAGCCTAC TGATCACTCT ATCTCAGTCT GGTGAAACGG CAGATACCTT AGCCGCGCTA 
CGTTTAGCGA AAGAGAAAGG CTATATGGCG GCGATGACGA TTTGTAACGT TGCGGGTTCT 
TCTCTCGTGC GTGAATCGGA TTTCGCCTTT ATGACTCGCG CAGGTACTGA GATTGGTGTG 
GCTTCAACCA AAGCCTTTAC CACTCAGCTA GTCACATTGT TGATGCTGGT GACTGCACTT 
GGTAAGCAGC AACAGCGCAT TGGTCGCGAG TTAGAAGCTG AGATCGTACA TGCATTGCAT 
CAACTGCCGA AGCAGATTGA AACCGCATTG TCGTTTGAAA AACAGATCGA AACGCTCGCG 
GAAGATTTTG CTGATAAGCA TCATACCCTC TTCTTGGGGC GCGGTGAGTA CTACCCGATT 
GCGGTAGAAG CGTCTCTTAA ACTGAAAGAG ATCTCTTACA TCCACGCAGA AGCCTATGCA 
GCGGGCGAGC TAAAGCATGG CCCATTGGCG TTAATTGATG CGGATATGCC AGTGGTTGTG 
GTTGCACCAA GCAATGAACT GTTAGAAAAG CTTAAATCCA ATATTGAAGA AGTGCGTGCG 
CGCGGTGGTT TATTGTACGT ATTTTCCGAT GAAGTGGCGG GCTTTGAAGC GGATGAGACG 
ATGAAAATCA TTGCGATGCC GCATGTTAGC GAGATTGTGG CTCCGATTTA TTACACCATC 
CCAATGCAAC TGCTCTCTTA CCATGTGGCT TTAATCAAAG GTACCGATGT TGACCAGCCT 
CGTAACCTTG CTAAAGCGGT AACTGTCGAG TAA 

 

Protein sequence

MCGIVGAVAQ RDVAEILVQG LRRLEYRGYD SAGVAVVDSD KQLTRLRRLG KVQELADAVE 
AAQVAGGTGI AHTRWATHGE PSEINAHPHI SGDITVVHNG IIENHEMLRT MLQDRGYVFT 
SQTDTEVIAH LVEWELRSAS SLLEAVQTTV KQLTGAYGTV VMDRNDPSRL VVARSGSPIV 
IGFGIGENFL ASDQLALLNV TRRFMYLEEG DVAEMTRRDV RVFDALGQPV QREISESNLE 
HDAADKGHYR HYMQKEIFEQ PKALINTMEG RITHDCVVVE SIGVHAAEIL AKVEHVQIVA 
CGTSYNAGMT ARYWFESLAG VSCDVEIASE FRYRKFVTRP NSLLITLSQS GETADTLAAL 
RLAKEKGYMA AMTICNVAGS SLVRESDFAF MTRAGTEIGV ASTKAFTTQL VTLLMLVTAL 
GKQQQRIGRE LEAEIVHALH QLPKQIETAL SFEKQIETLA EDFADKHHTL FLGRGEYYPI 
AVEASLKLKE ISYIHAEAYA AGELKHGPLA LIDADMPVVV VAPSNELLEK LKSNIEEVRA 
RGGLLYVFSD EVAGFEADET MKIIAMPHVS EIVAPIYYTI PMQLLSYHVA LIKGTDVDQP 
RNLAKAVTVE