Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0029 |
Symbol | epd |
ID | 5136919 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 25031 |
End bp | 26056 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640531489 |
Product | erythrose 4-phosphate dehydrogenase |
Protein accession | YP_001216003 |
Protein GI | 229259769 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase |
TIGRFAM ID | [TIGR01532] D-erythrose-4-phosphate dehydrogenase [TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.000119037 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAGGG TAGCAATTAA CGGCTTTGGG CGCATTGGGC GTAATGTGTT ACGCGCTGTG TATGAAAGTG GTAAACGTGA CCGCATTCAA GTGGTTGCGG TGAACGAGCT TGCCAAGCCA GATGCGATGG CACACCTCCT GCAGTACGAT ACGAGCCACG GTCGCTTTGG CAAAAAAATC AGCCATGATC AGCAGCATAT CTATGTTCAC CATCAAAATG GTGAGTATGA CTCAATCCGC ATTCTGCATC TTTCGGAAAT TCCTCTCTTA CCTTGGCGTG ATTTAGGCGT GGATTTAGTC CTCGACTGCA CAGGTGTGTA TGGTTGCCAA GAGGATGGTC AGCAACATAT TGATGCGGGC GCGAAGTTAG TTTTATTTTC CCATCCTGGT GCTAGCGATC TCGACAACAC CATCATCTAT GGCGTGAATC ATGAGACGCT CACTGCTGAG CATAAAATCG TCTCTAACGG TTCTTGTACC ACCAACTGCA TTGTGCCCAT CATCAAGGTA TTGGATGACG CATTCGGCAT TGATTCTGGC ACCATCACCA CCATCCATTC CTCGATGAAC GATCAACAAG TGATTGATGC GTATCATAAT GACTTACGAC GCACACGAGC GGCCAGTCAA TCTATCATTC CGGTTGATAC TAAGTTGCAT AAAGGTATTG AAAGAATATT TCCGAAATTT TCTAACAAAT TTGAAGCGAT TTCGGTGCGT GTACCAACAG TAAATGTGAC CGCGATGGAT TTAAGTGTCA CAATTAAATC AAATGTGAAA GTTAATGACG TAAATCAAAC CATTGTGAAC GCATCTCAGT GTACATTACG TGGCATTGTT GACTATACTG AAGCGCCTTT GGTTTCCATC GATTTTAACC ACGATCCGCA CAGCGCGATT GTGGATGGGA CGCAAACGAG AGTCAGTAAC GGGCAGTTAG TAAAAATGCT CGTTTGGTGT GATAACGAAT GGGGCTTTGC CAACCGGATG TTAGATACCG CATTGGCAAT GCAGGCCACG CAGTAG
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Protein sequence | MLRVAINGFG RIGRNVLRAV YESGKRDRIQ VVAVNELAKP DAMAHLLQYD TSHGRFGKKI SHDQQHIYVH HQNGEYDSIR ILHLSEIPLL PWRDLGVDLV LDCTGVYGCQ EDGQQHIDAG AKLVLFSHPG ASDLDNTIIY GVNHETLTAE HKIVSNGSCT TNCIVPIIKV LDDAFGIDSG TITTIHSSMN DQQVIDAYHN DLRRTRAASQ SIIPVDTKLH KGIERIFPKF SNKFEAISVR VPTVNVTAMD LSVTIKSNVK VNDVNQTIVN ASQCTLRGIV DYTEAPLVSI DFNHDPHSAI VDGTQTRVSN GQLVKMLVWC DNEWGFANRM LDTALAMQAT Q
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