| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0026 |
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| Symbol | tktA-1 |
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| ID | 5135603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 19724 |
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| End bp | 21808 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640531486 |
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| Product | transketolase |
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| Protein accession | YP_001216000 |
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| Protein GI | 147675757 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0910343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAGCAGC AGGGGGGCTT TGCGACAATA GCCGCCACTG ATTTTCCGCA TCCATTCATT
TCGCTTACTT CCCATTTAGG AGTCGACATG TCTTCTCGCA AACAACTTGC CAATGCTATC
CGCGCCCTGA GCATGGACGG CGTTCAAAAA GCTAACTCTG GCCACCCGGG AGCCCCAATG
GGCATGGCGG ATATCGCCGA AGTGCTGTGG CGTTCACACT TAAACCACAA CCCACAAAAC
CCAAACTGGG CTGACCGCGA CCGTTTCGTA CTGTCTAACG GCCACGGCTC TATGCTGATT
TACTCGCTGC TACACCTGAG CGGCTATGAG CTGTCGATTG ACGATTTGAA AAACTTCCGT
CAACTACACT CCAAAACACC GGGTCACCCA GAGTACGGTT ATGCACCGGG CATCGAAACG
ACTACGGGCC CACTCGGCCA AGGCATCACC AATGCCGTAG GTATGGCGAT TGCTGAGAAA
GCACTGGCGG CGCAGTTCAA CAAACCGGGT CACGACATCG TTGACCACTT CACTTATGTG
TTCATGGGTG ACGGCTGTTT GATGGAAGGT ATCTCGCACG AAGCGTGTTC ACTGGCGGGC
ACACTTGGCC TTGGCAAACT GATTGCGTTC TGGGATGACA ACGGTATCTC TATCGACGGC
CACGTGGAAG GCTGGTTCTC AGACGACACA CCAAAACGTT TTGAAGCGTA CGGCTGGCAC
GTAATCCCAG CGGTTGATGG TCACGATGCA GACGCGATTA ATGCAGCAAT TGAAGCGGCG
AAAGCAGAAA CCTCTCGCCC AACGCTGATT TGTACCAAAA CCATCATCGG TTTCGGCTCT
CCAAACAAAG CGGGCTCACA CGACTGTCAC GGCGCGCCTC TGGGCAACGA TGAAATCAAA
GCTGCACGTG AATTCTTGGG TTGGGAACAC GCTCCGTTTG AAATCCCAGC GGACATCTAC
GCAGCGTGGG ATGCAAAACA AGCAGGCGCA AGCAAAGAAG CCGCTTGGAA TGAGAAATTC
GCCGCTTACG CGAAAGCTTA CCCAGCCGAA GCTGCTGAAT ACAAACGCCG CGTAGCGGGC
GAGCTGCCAG CGAATTGGGA AGCCGCAACC AGCGAGATTA TCGCTAACCT GCAAGCTAAC
CCTGCCAACA TCGCATCGCG TAAAGCATCA CAAAATGCGC TGGAAGCGTT CGGCAAACTG
CTGCCAGAAT TTATGGGTGG TTCTGCTGAC TTGGCGCCTT CTAACCTCAC CATGTGGTCT
GGCTCTAAGT CACTGACAGC AGAAGATGCG TCAGGCAACT ACATCCACTA CGGTGTGCGT
GAGTTTGGTA TGACGGCCAT CATCAACGGT ATCGCGCTGC ACGGCGGTTT TGTCCCTTAC
GGTGCAACCT TCCTGATGTT TATGGAATAC GCGCGTAACG CGATGCGTAT GGCAGCACTG
ATGAAAGTGC AAAATATCCA AGTGTACACG CATGACTCTA TCGGTCTGGG TGAAGATGGC
CCAACTCACC AACCAGTTGA GCAAATCGCT TCTCTGCGTA TGACACCAAA CATGAGCACA
TGGCGCCCAT GTGACCAAGT GGAATCGGCA GTGGCTTGGA AACTGGCCAT CGAGCGTAAA
GATGCGCCAT CTGCGCTGAT TTTCTCGCGT CAAAACCTTG CGCAGCAACC ACGCAGCGCA
GAGCAAGTCG CGAACATCGC TAAAGGCGGT TACATCCTGA AAGATTGTGC AGGCCAACCT
GAGCTAATTC TGATTGCAAC AGGCTCTGAA GTGGAACTGG CGGTTGCCGC TTACGAGCAA
CTGAGCGCCG AAGGTAAAGC GGTTCGCGTG GTCTCTATGC CATCGACCGA CGCATTTGAT
AAGCAAGATG CAGCCTACCG TGAAGCCGTT CTGCCATCTG CAGTCACCAA GCGTATCGCG
ATTGAAGCGG GCATTGCCGA CTTCTGGTAC AAGTATGTTG GCTTTGGTGG TCGCATCATC
GGTATGACTA GCTTCGGCGA ATCTGCGCCA GCCGGTGAGC TGTTCAAACT GTTTGGTTTC
ACCACTGAAA ATGTGGTGAA GCAAGCCAAA GAACTGCTGG CGTAA
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| Protein sequence | MQQQGGFATI AATDFPHPFI SLTSHLGVDM SSRKQLANAI RALSMDGVQK ANSGHPGAPM
GMADIAEVLW RSHLNHNPQN PNWADRDRFV LSNGHGSMLI YSLLHLSGYE LSIDDLKNFR
QLHSKTPGHP EYGYAPGIET TTGPLGQGIT NAVGMAIAEK ALAAQFNKPG HDIVDHFTYV
FMGDGCLMEG ISHEACSLAG TLGLGKLIAF WDDNGISIDG HVEGWFSDDT PKRFEAYGWH
VIPAVDGHDA DAINAAIEAA KAETSRPTLI CTKTIIGFGS PNKAGSHDCH GAPLGNDEIK
AAREFLGWEH APFEIPADIY AAWDAKQAGA SKEAAWNEKF AAYAKAYPAE AAEYKRRVAG
ELPANWEAAT SEIIANLQAN PANIASRKAS QNALEAFGKL LPEFMGGSAD LAPSNLTMWS
GSKSLTAEDA SGNYIHYGVR EFGMTAIING IALHGGFVPY GATFLMFMEY ARNAMRMAAL
MKVQNIQVYT HDSIGLGEDG PTHQPVEQIA SLRMTPNMST WRPCDQVESA VAWKLAIERK
DAPSALIFSR QNLAQQPRSA EQVANIAKGG YILKDCAGQP ELILIATGSE VELAVAAYEQ
LSAEGKAVRV VSMPSTDAFD KQDAAYREAV LPSAVTKRIA IEAGIADFWY KYVGFGGRII
GMTSFGESAP AGELFKLFGF TTENVVKQAK ELLA
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