Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0021 |
Symbol | |
ID | 5135726 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 15995 |
End bp | 16726 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640531481 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_001215995 |
Protein GI | 147674458 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 60 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCATCC CTCGAATTTA TCATCCAGAA CCGATCCACC AGCTTGGCAC CGTAGCCCTG AGTGAAGATG CCGCAGGGCA TATCGGTCGC GTATTGCGTA TGCAAGCTGG GCAAGAAGTG CTGCTGTTTG ATGGTTTTGG GGCTGAATTC CCAGCCGTGA TCAGTGAAGT TGGCAAAAAA CAGGTATTGG TCAATATCAC TGAGCGCGTA GAAAACAGCA TTGAATCGCC GCTCGATCTG CATCTTGGGC AGGTGATTTC ACGCGGCGAT AAGATGGAAT TCACCATCCA AAAATCGGTG GAATTGGGCG TCACTACCAT CACCCCTCTG CTTTCTGAGC GTTGTGGCGT GAAGCTGGAT GAAAAACGCT TCGAGAAGAA GATCCAGCAG TGGCAGAAAA TTGCGATCAG CGCTTGCGAG CAGTGTGGCC GTAATACCGT GCCAGAAATC CGCCCAATTA TGGATCTCGA AGCTTGGTGT GCAGAACCCA CCGAGGCACT GAAACTCAAT TTGCACCCAC GCGCTAAATA CTCGATCAAC ACCTTACCCA CCCCAGTGAG CAAAGTTCGT TTGCTGATTG GTCCTGAAGG CGGCTTGTCA GCGGAAGAAA TTGATATGAC TCGCCGTTAC CAGTTTGAAG AAACCTTGTT AGGCCCACGC GTACTGCGCA CAGAAACTGC GGCACTCACA GCGATAACTG CACTACAAGT TCGTTTCGGC GATCTTGGCT AA
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Protein sequence | MRIPRIYHPE PIHQLGTVAL SEDAAGHIGR VLRMQAGQEV LLFDGFGAEF PAVISEVGKK QVLVNITERV ENSIESPLDL HLGQVISRGD KMEFTIQKSV ELGVTTITPL LSERCGVKLD EKRFEKKIQQ WQKIAISACE QCGRNTVPEI RPIMDLEAWC AEPTEALKLN LHPRAKYSIN TLPTPVSKVR LLIGPEGGLS AEEIDMTRRY QFEETLLGPR VLRTETAALT AITALQVRFG DLG
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