Gene VC0395_A0021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0021 
Symbol 
ID5135726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp15995 
End bp16726 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content51% 
IMG OID640531481 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001215995 
Protein GI147674458 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones60 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCATCC CTCGAATTTA TCATCCAGAA CCGATCCACC AGCTTGGCAC CGTAGCCCTG 
AGTGAAGATG CCGCAGGGCA TATCGGTCGC GTATTGCGTA TGCAAGCTGG GCAAGAAGTG
CTGCTGTTTG ATGGTTTTGG GGCTGAATTC CCAGCCGTGA TCAGTGAAGT TGGCAAAAAA
CAGGTATTGG TCAATATCAC TGAGCGCGTA GAAAACAGCA TTGAATCGCC GCTCGATCTG
CATCTTGGGC AGGTGATTTC ACGCGGCGAT AAGATGGAAT TCACCATCCA AAAATCGGTG
GAATTGGGCG TCACTACCAT CACCCCTCTG CTTTCTGAGC GTTGTGGCGT GAAGCTGGAT
GAAAAACGCT TCGAGAAGAA GATCCAGCAG TGGCAGAAAA TTGCGATCAG CGCTTGCGAG
CAGTGTGGCC GTAATACCGT GCCAGAAATC CGCCCAATTA TGGATCTCGA AGCTTGGTGT
GCAGAACCCA CCGAGGCACT GAAACTCAAT TTGCACCCAC GCGCTAAATA CTCGATCAAC
ACCTTACCCA CCCCAGTGAG CAAAGTTCGT TTGCTGATTG GTCCTGAAGG CGGCTTGTCA
GCGGAAGAAA TTGATATGAC TCGCCGTTAC CAGTTTGAAG AAACCTTGTT AGGCCCACGC
GTACTGCGCA CAGAAACTGC GGCACTCACA GCGATAACTG CACTACAAGT TCGTTTCGGC
GATCTTGGCT AA
 
Protein sequence
MRIPRIYHPE PIHQLGTVAL SEDAAGHIGR VLRMQAGQEV LLFDGFGAEF PAVISEVGKK 
QVLVNITERV ENSIESPLDL HLGQVISRGD KMEFTIQKSV ELGVTTITPL LSERCGVKLD
EKRFEKKIQQ WQKIAISACE QCGRNTVPEI RPIMDLEAWC AEPTEALKLN LHPRAKYSIN
TLPTPVSKVR LLIGPEGGLS AEEIDMTRRY QFEETLLGPR VLRTETAALT AITALQVRFG
DLG