Gene VC0395_A0015 details

Gene Information

• Locus tag: VC0395_A0015
• Symbol: pilU
• ID: 5137107
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 10475
• End bp: 11581
• Gene Length: 1107 bp
• Protein Length: 368 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640531475
• Product: twitching motility protein PilU
• Protein accession: YP_001215989
• Protein GI: 147675116
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG5008] Tfp pilus assembly protein, ATPase PilU
• TIGRFAM ID: [TIGR01420] pilus retraction protein PilT

Plasmid Coverage information

• Num covering plasmid clones: 54
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGTTGA ATCAATATCT GGATAGCATG CTGACTCATA AAGCATCGGA TCTGTACATT 
ACGGTGGGTG CACCGATTTT GTATCGAGTC GATGGTGAAT TGCGTGCACA AGGTGAAGCG 
CTCAGCGTGG CGGATGTGAC GGCCTTATTG CATGCGATGA TGGATGACGC AAGGCAAGCA 
GAATTTAAGC AGACGCGCGA AGCGAACTTT GCTGTGGTGC GTGACAGTGG CCGTTTTCGG 
GTCAGTGCAT TTTTCCAACG TGAATTGCCG GGGGCGGTGA TCCGCCGGAT TGAAACGCGC 
ATTCCCACCT TTGAAGAACT GAAATTGCCT GAAGTGCTGC AAAATTTGGC GATTGCCAAA 
CGCGGTTTAG TGTTGGTGGT TGGCGCAACC GGTTCGGGTA AATCGACCAC TATGGCAGCC 
ATGACTGGCT ATCGTAATCA GCATCGCACC GGGCATATTT TGACGGTCGA AGATCCCATT 
GAGTTTGTAC ATGAACATAA GCGCTGTATC GTGACGCAGC GAGAAGTCGG GCTGGATACC 
GAAAGTTATG AAGTGGCGCT GAAAAACTCG CTGCGCCAAG CCCCCGATAT GATTTTGATT 
GGTGAAATCC GCAGCCGAGA AACCATGGAA TACGCGATGA CTTTCGCGGA AACGGGGCAT 
TTGTGTATGG CCACGCTGCA CGCCAATAAC GCCAACCAAG CGTTAGAGCG GATTTTGCAT 
TTAGTGCCGA AAGAGCAGCG TGAGCAGTTT TTGCTCGATT TGTCACTCAA CCTCAAAGGC 
GTGATTGCCC AGCAATTATT GCGCGATAAA AATGGCAAAG GTCGACATGG GGTGTTTGAA 
GTGTTGCTCA ATAGCCCGCG TATCGCGGAT TTAATTCGCC GCGGTGAACT GCATGAGCTG 
AAAGCGACCA TGGCTCGTTC GCAAGAAGTG GGGATGCAAA CTTTCGATCA AGCCTTATAC 
CAGCTTGTGG TGGATGACAA AATCAGTGAG CAAGATGCCC TGCACAGTGC CGATTCAGCC 
AACGATCTGC GTTTGATGCT CAAAACCAAG CGTGGTGATG ACTACGGCAG CGGCTCTTTG 
CAGAATGTGA AGATTGATAT GGAGTAG 

 

Protein sequence

MELNQYLDSM LTHKASDLYI TVGAPILYRV DGELRAQGEA LSVADVTALL HAMMDDARQA 
EFKQTREANF AVVRDSGRFR VSAFFQRELP GAVIRRIETR IPTFEELKLP EVLQNLAIAK 
RGLVLVVGAT GSGKSTTMAA MTGYRNQHRT GHILTVEDPI EFVHEHKRCI VTQREVGLDT 
ESYEVALKNS LRQAPDMILI GEIRSRETME YAMTFAETGH LCMATLHANN ANQALERILH 
LVPKEQREQF LLDLSLNLKG VIAQQLLRDK NGKGRHGVFE VLLNSPRIAD LIRRGELHEL 
KATMARSQEV GMQTFDQALY QLVVDDKISE QDALHSADSA NDLRLMLKTK RGDDYGSGSL 
QNVKIDME