| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0013 |
|---|
| Symbol | |
|---|
| ID | 5137312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 8687 |
|---|
| End bp | 9397 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640531473 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001215987 |
|---|
| Protein GI | 147673920 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 56 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAGTA TTCAACAAAA CATTGAACAT ATCACTGCAC AGATTGAGAG CGCACAACAA
AAGTGTGGAC GCGCTCGAAG CAGTGTGCAA CTTCTCGCGG TAAGTAAAAC TAAACCCGTC
GAGGCAATTC TTGAGGCGAC TCAAGCAGGT CAACGCTACT TTGGTGAGAA TTATGTGCAG
GAAGGCGTGG ATAAAATCCG CTATTTTGCC GAACATCACC CGCAGTTAGC ACTGGAGTGG
CACTTTATCG GTCCACTACA GTCGAATAAA ACGCGCTTAG TGGCAGAGCA TTTTGACTGG
GTTCACACCA TTGATCGCGA GAAAATTGCC TTGCGCCTCA GTGAACAGCG CCCTGTGGAT
ATGCCACCGC TGCAAGTGCT GATTCAGGTC AACACCAGCG GTGAAGCCTC AAAATCTGGC
ATCGAACCGC AGCAATTATT TACATTAGCT GAATTGATTT CTCGTCTGCC AAACCTCACC
TTAAGAGGGC TGATGTCAAT TCCTGAGAAC GTGCCGGATT ACCCTGCGCA ACTGGCGGCA
TTTTCCCAAT TAGCCGAATT GCAGCAACAA CTGGCTCAGA AATACCCGCA GATTGACACC
TTATCCATGG GTATGAGTGG CGACATGCAA GCAGCGATTG AAGCAGGCAG CACCATAGTG
CGTATTGGTA CCGCGATTTT CGGCGAGCGC GATTACAGCC GCAACGCTTA A
|
|---|
| Protein sequence | MRSIQQNIEH ITAQIESAQQ KCGRARSSVQ LLAVSKTKPV EAILEATQAG QRYFGENYVQ
EGVDKIRYFA EHHPQLALEW HFIGPLQSNK TRLVAEHFDW VHTIDREKIA LRLSEQRPVD
MPPLQVLIQV NTSGEASKSG IEPQQLFTLA ELISRLPNLT LRGLMSIPEN VPDYPAQLAA
FSQLAELQQQ LAQKYPQIDT LSMGMSGDMQ AAIEAGSTIV RIGTAIFGER DYSRNA
|
|---|
| |