| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0007 |
|---|
| Symbol | |
|---|
| ID | 5136296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 4597 |
|---|
| End bp | 5772 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640531467 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001215981 |
|---|
| Protein GI | 147675539 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.712639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAACGC CTCCACCGCT TAGCCTATAC ATTCATATTC CGTGGTGCGT GCAGAAATGC
CCGTATTGCG ATTTCAACTC GCACGCGCAG AAAGGCGATA TTCCTGAGCA AGAGTATTTG
GATGCGCTGC TGGAAGATCT GGATCGCGAC ATCGAACGTT ACCAGCTCAA GGGAGATCCG
CGCCTGCTGC ACTCGATCTT TATTGGCGGT GGTACACCGA GCCTTATCTC TGCGGAAGGG
ATCGCGCGTT TGCTGCAAGG CGTTGCCGAG CGTATTGCGT TTAAGCCAGA GATTGAAATC
ACCATGGAAG CCAACCCCGG CACGATTGAA GCGCAGCGTT TTGCTGGCTA TCGCACCGCT
GGGGTTACAC GTATTTCGAT TGGTGTGCAG AGTTTTGAGC CAGAAAAATT AGCGCGTTTA
GGGCGCATTC ACGGCCAACA AGAAGCGGTT CGCGCCGCTC AGCTCGCCCA CCAAATTGGC
CTCAACAGCT TTAATTTGGA TTTGATGCAC GGCTTACCGG ATCAAACGCC CGAGCAAGCA
CTGGCCGATT TGGATCAGGC GATCGCGCTC AATCCGCCGC ATCTCTCTTG GTATCAACTG
ACGATTGAAC CCAACACGCT GTTTTACTCG AAACCGCCTA AGCTACCGGA TGAAGATGCG
CTATGGGATA TTTTCGAGTT AGGACATCAA AAGCTCAGTG ATGCAGGGTA TGTGCAGTAT
GAGATTTCTG GCTACAGCAA GCCGGGCTAT CAGTGCCAGC ACAACCTCAA CTATTGGCGC
TTTGGTGACT ACCTCGGGAT TGGCTGTGGC GCGCACGGCA AACTGAGTTT TGCTGATGGG
CGCATTGTCC GCACCACCAA AACCAAGCAC CCGCGCGGCT ACTTGGCAGC GTTGAACAAT
CTGGCCAAAG CTTATTTGGA TAGCGAGCAG TTGGTTGCCG ATCAAGACAA GCCGTTTGAG
TTTTTTATGA ACCGCTTTCG CTTGATTGAG CCCTGCCCGA AAGCCGATTT TACCGCCACC
ACGGGACTTA CGATTGACGT GATCCGCCCA ACCTTAGATT GGGCGCTCAA TGAAGGCTAT
CTCAGTGAAG ATGATCTGCA CTGGCAAATC ACAGAAAAGG GCAAACTGTT CCTCAATGAT
CTGCTCGAAG CCTTTATGGC TGATGAAGAA GAATAA
|
|---|
| Protein sequence | MLTPPPLSLY IHIPWCVQKC PYCDFNSHAQ KGDIPEQEYL DALLEDLDRD IERYQLKGDP
RLLHSIFIGG GTPSLISAEG IARLLQGVAE RIAFKPEIEI TMEANPGTIE AQRFAGYRTA
GVTRISIGVQ SFEPEKLARL GRIHGQQEAV RAAQLAHQIG LNSFNLDLMH GLPDQTPEQA
LADLDQAIAL NPPHLSWYQL TIEPNTLFYS KPPKLPDEDA LWDIFELGHQ KLSDAGYVQY
EISGYSKPGY QCQHNLNYWR FGDYLGIGCG AHGKLSFADG RIVRTTKTKH PRGYLAALNN
LAKAYLDSEQ LVADQDKPFE FFMNRFRLIE PCPKADFTAT TGLTIDVIRP TLDWALNEGY
LSEDDLHWQI TEKGKLFLND LLEAFMADEE E
|
|---|
| |