| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0001 |
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| Symbol | |
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| ID | 5135936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 3023753 |
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| End bp | 811 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 0 |
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| IMG OID | 640531461 |
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| Product | membrane-bound lytic murein transglycosylase C |
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| Protein accession | YP_001215975 |
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| Protein GI | 147674590 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000000403894 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAAGT TAGTGTTATG TATCACCGCT CTATTATTGA GTGGCTGTAG TCGTGAATTT
ATCGAGAAAA TTTACGATGT TGATTACGAA CCCACTAACC GTTTCGCCAA GAACTTAGCC
GAATTACCCG GACAGTTTCA GAAAGACACC GCCGCACTGG ATGCATTGAT CAACAGCTTT
TCCGGCAATA TCGAAAAACG CTGGGGACGC CGCGAGCTAA AAATCGCTGG AAAAAATAAC
TATGTCAAAT ACATAGACAA CTACCTTAGC CGCTCTGAAG TCAACTTCAC CGAAGGTCGA
ATCATAGTAG AAACCGTTTC ACCTATCGAT CCTAAAGCCC ATTTACGCAA TGCGATCATC
ACGACCTTAC TGACTCCCGA TGATCCCGCG CACGTCGATC TTTTCTCCTC AAAAGACATT
GAACTCAAAG GCCAACCCTT TTTGTATCAG CAGGTACTCG ATCAAGATGG TCAGCCGATC
CAGTGGTCAT GGCGCGCTAA CCGTTACGCC GATTACCTCA TCGCTAACCA TTTGAAAGTG
AAGCAAGTCG ATTTCAAAAA AGCCTATTAC GTCGAAATCC CCATGGTCAA AGATCAAATC
GACATCCGTG GCTACAAATA CGCCAATATC GTGCGTAAGG CCTCTCTCAA ATACGATATC
CCGGAAGATC TGATCTACGC GATCATCAAA ACCGAAAGCA GTTTCAACCC CTATGCGGTG
AGTTGGGCCA ACGCTTATGG CTTAATGCAA GTGGTGCCTA AAACCGCAGG ACGGGATGTG
TTCAAGCTAG TCAAAAACCG CTCTGGCGAA CBio ::Seq ::RichSeq =HASH (0x18a8
bc00 )
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| Protein sequence | MRKLVLCITA LLLSGCSREF IEKIYDVDYE PTNRFAKNLA ELPGQFQKDT AALDALINSF
SGNIEKRWGR RELKIAGKNN YVKYIDNYLS RSEVNFTEGR IIVETVSPID PKAHLRNAII
TTLLTPDDPA HVDLFSSKDI ELKGQPFLYQ QVLDQDGQPI QWSWRANRYA DYLIANHLKV
KQVDFKKAYY VEIPMVKDQI DIRGYKYANI VRKASLKYDI PEDLIYAIIK TESSFNPYAV
SWANAYGLMQ VVPKTAGRDV FKLVKNRSGE PSPEYLFNPE NNIDTGTAYF YILKNRYLKE
VRHPTSLEYS MISAYNGGTG GVLSTFSSDR QRAMRDLNAL QPNQVYWALT KKHPNAEARR
YLEKVTKFKK EFNAG
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