| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1136 |
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| Symbol | |
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| ID | 5134870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 1103707 |
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| End bp | 1105761 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640531458 |
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| Product | putative C4-dicarboxylate transport sensor protein |
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| Protein accession | YP_001215972 |
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| Protein GI | 147672217 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00183456 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGCTCA ATAAAGCAAG TTGGATAGTG TTGGTGATTT TACTGCTGAT CGCGGTGCGA
TGGGGTTCGC ATGCCGTCAG TGAAAACTGG CAGCTGAGGC AAGCGCAGCG CCACGGCGAA
CAGCGTTTGC TCGATTACAT CAGTGATGTG AGGCGCACCC TAAGCCGCTT TTATCATTTG
CCCTACTTGA TGACCAATGA AGCCAACACA CTCAAACTGT TTCAGGGCGA TGATCGCCCG
CAAGCCCAAT TACAGCAACA ATTGGCGCAA CTCGATAAAG CCGCGAATAC CAAAGGTTGG
TACATACTGA CGCTTTCCGG TTCACTGCTA ACGGCCAGTA AAAATGCTGA AAACTGGAAG
CTCTCTGATG GCAAAGCCAT CATCCATAAA ATTTTGCAGC AGCGCGAAGG GATTTCGATT
GTCACCAAAT CCGTTGGCAG CACCCCCACC TATTTTGTTG CTGCGCCAGT TTATCTGGAT
GTCGAGATCG TCGGCGCGGT TGCCGTACAA GTGGATTTAA ACGTGCTTGC CGATCAATGG
TTTGCCAGTG ATGAGTTGAT CCTTTTTCAA AATTCTCAAC GCCATTATTT TCTCTCCAGC
AGTTCAGTTT ACAGCGCAGA CTGGATAGCG ACTCACCCCG AAGTGGTCGC AGCGGCGCAA
AAACGTAGTC TATTTGATGG AACACGCCTA ACACTGTGGC AAGTCGAACA AGCGCCTTAT
CTTGCCCAAT CCGTCACGCT GGATGATCTG AATTGGACGC TCACTTACCT CACGCCGCTG
AAAAATCTTA ATGCCACGGT TAACTGGATC AGCACCAGTG CCATGGTCGG CGTATTATTG
CTGCTATTAC TGATGCGTCT GCGTTACGAG CAGTATCAAA AGCGCCTCAG TGAAGCCAAG
ATTCAACACG TGTTGTTTGA GGCCGAAGAG CGCCAACGCA ATATGATCAA CAAAACTCAT
GTTGGGCTGC TGCTGATCGA TGGACAAGGC CGCATTGAAG AGATCAATCC GATGGCGAAG
CGCTATTTTA GCCTCTCGGA CAGCATGGTG CGTCAGCTGC AAGCTTGGTC GCTGTTTGAT
ACTGGAAACC CGAATGCCAC CGTGCCACTG CTGCTGAAAA ATCTCACCGA GCATCAAGAG
CTGGCCGACA TCACCAACGT GGAAACGGTT GCGCGGCGCA GTGATGGCAG TTTGTTTCCG
GTGCTGTTCT CCCTGATTGC GGTCAGTTGG AAAGATCGCC GCCACTATTT GGTGACACTG
ATTGATATCA GTAAACACAA GAAAGCGGAA ATCGCACTAC AGAATGCCAA TCGCGATTTG
CAACAGCGAG TAGAAGAGCG CACCGCAGCG CTGAAATCCG CTCAACAAGA GCTGATTGAA
GCGAGCAAAA TGGCCGCACT GGGACGTATG TCAAGTGCGA TTACCCATGA GCTCAATCAG
CCCCTTACCG GTTTGCGCAC CCTACTTTCG AGCAACGAAT TGCTCCTTGA GCGCGGTGAA
ACCCAACTGC TCAAAGCCAA CACTAAGCTG GTGCATTCTT TGATTGATCG CATGGCGGCG
ATGACTTCCC AACTCAAATC CTTCGCGTTC AATCGCCCCG ACGCTTTGCA AGCCATCTCG
CTGCCCGATG CACTACAGGA GATTTTGCGC ATCCATCAAG CGCGCTTAAC TCCGGTGGAT
GTTCGAGTTC GACTTTCTAG CGATCTGCCG TTGGTGATGG GGGAAGAACA ACGCTTGCGC
CAAGTGCTCG GCAACTTGGT GTCAAATGCG TTAGATGCGA TGAGTCAAAC CTTAGAACCG
AAGCTCAGCA TTAGCGCCGT GAGTGAAGAA GATCAAGTGA TCGTGCGCGT GAGCGATAAC
GGCTGTGGTA TTGCACCAGA ACTCTTAACC ACCATGTTTG AACCGTTTCA AACCAGTAAG
AAAATGGGCG AAGGATTAGG GCTTGGCCTA GCGATTGTCG CCAATAGCCT GCGAGATATG
CAAGGCAGTA TTGTGGCAAC GAATAATCCC GATGCGGGCA TGAGCTTTGA AATCCGCTTG
CGTGCCGCAC AATAG
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| Protein sequence | MKLNKASWIV LVILLLIAVR WGSHAVSENW QLRQAQRHGE QRLLDYISDV RRTLSRFYHL
PYLMTNEANT LKLFQGDDRP QAQLQQQLAQ LDKAANTKGW YILTLSGSLL TASKNAENWK
LSDGKAIIHK ILQQREGISI VTKSVGSTPT YFVAAPVYLD VEIVGAVAVQ VDLNVLADQW
FASDELILFQ NSQRHYFLSS SSVYSADWIA THPEVVAAAQ KRSLFDGTRL TLWQVEQAPY
LAQSVTLDDL NWTLTYLTPL KNLNATVNWI STSAMVGVLL LLLLMRLRYE QYQKRLSEAK
IQHVLFEAEE RQRNMINKTH VGLLLIDGQG RIEEINPMAK RYFSLSDSMV RQLQAWSLFD
TGNPNATVPL LLKNLTEHQE LADITNVETV ARRSDGSLFP VLFSLIAVSW KDRRHYLVTL
IDISKHKKAE IALQNANRDL QQRVEERTAA LKSAQQELIE ASKMAALGRM SSAITHELNQ
PLTGLRTLLS SNELLLERGE TQLLKANTKL VHSLIDRMAA MTSQLKSFAF NRPDALQAIS
LPDALQEILR IHQARLTPVD VRVRLSSDLP LVMGEEQRLR QVLGNLVSNA LDAMSQTLEP
KLSISAVSEE DQVIVRVSDN GCGIAPELLT TMFEPFQTSK KMGEGLGLGL AIVANSLRDM
QGSIVATNNP DAGMSFEIRL RAAQ
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