| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1131 |
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| Symbol | |
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| ID | 5134629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 1098442 |
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| End bp | 1100175 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640531453 |
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| Product | hypothetical protein |
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| Protein accession | YP_001215967 |
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| Protein GI | 147671761 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGTTTATC CCCACGCTGA TTTTGATCTG TCTGACCTAG TCTCGGTTTG GGGTAAATGG
GCAGGCGGCA TTTTCCATTT TCCCGGCTTA AGTGCCGAAA CCCTGCTGTA TCGCAGTTTC
TATTCCTCGG AAGGCATGTT TGGCTCGATT GCAGCGATAA GCTGGAGCTT CGTGTTCATG
TTCATCCTGT TTGGTGCCTT CTTAGTGCGC TCTGGTGTCG GCGATTACAT CATGGATGTG
TCACGCGCTG CGGCAGGTAA AGTGGTGGGG GGGCCCGGTT TTATTGCTGT GTTGGCTTCG
GGTTTAATGG GGTCGGTTTC AGGCTCTAGT GTCGCGAACA CGGTCTCTAC GGGCGTTATT
ACCATTCCCA TGATGAAAAA AGCGGGTTTT CCCGCACGTT TCGCCGCAGG GGTGGAAGCG
GCAGCTTCGA CCGGTGGGCA ACTCATGCCG CCGGTGATGG GGGCTGGCGC GTTCATCATG
GCGTCGTACA CGCAAATTCC GTATGTGGAT ATTGTTGCAG TGTCGTTTAT TCCGGCACTC
ATCTATTTCC TGTCCGTCGC GTTTTTCGTG CGGATTGAAG CCAAACGCAT GGGCGTACAG
ATTGTCACTA CGAGCCAAGA GCCGTTTATG AAAGTGCTGC TGTCGGGTTG GCATAACTTG
ATCCCACTCG CCGTGTTAGT GACTTTATTG GTGGTAGGTT TTACCCCAAC GTACGCGGCG
GGCTTGTCGA TTCTGTCGGT GATTGTTGCT TCGTGGTTTT CCAAAAATCA CAAAATGGGT
CCTAAAGCGA TCATTGAAGC GTTGGAGCAA GGGGCGAAAA ACATGGCGAC CACCGCGGTA
TTGCTGGTCG GTATCGGCTT GGTGATTAAC GTGATTAGCA CAACGGGCAT CGGCAATACC
TTCTCATTGA TGATCAACAA CTGGGCAAAT GGCGATCTGC TGACCATGCT GGTGTTGATC
ACTTTGGCCT CTTTAGTGCT GGGGATGGGG CTGCCAGTAA CGGCGGCGTA CATTGTGCTG
GGTACGCTTT CGGCTCCTGC GCTGTACAAA CTGCTGGCCG AAAGCCAGTT GGTGGATTTG
ATGGTTTCGG GGCAATTACC GGAACAAGCC AAAGCGATTT TCATGCTGGC GGCACCGGAT
CAACTCAGTT TGCTCAATGC GCCTATGGCG GCGGAAAAAG CCCATGAGCT GATTAGCCTT
GTGCCCGCGG ATTTTGTGGA AACCTTGCTA CAACAAAGCT TAGGGTTAGA AGCGATTGGT
CTGGCTCTGC TTTCGGCGCA CCTTATTATC TTCTGGCTCT CGCAAGACAG TAACGTGACG
CCACCGGTGT GTTTGACGGC ATTTGCCGCG GCCACCATCG CCAAAACCCC GCCGATGCGC
ACCGGATTTA CCGCGTGGAA AATTGCTAAA GGCTTGTATT TGGTTCCCGT GTTGATTGCC
TATACCCAAC TCATCAGTTG GGATGCGACC ACGGTTGTCA CCATCGGCAT CTTCGCGATT
TTTGGCACTT ACGCCATGAT TGGCGCGATT GAAGGCTATC TGGAAGGGCG GCTGAATCTC
TTATGGCGTT TGCTGTTGGC GGTGATCGGT GTGCTGCTGG TGTGGCCAAA TTTGCCGATT
TGGATCCGTT TAGTCTGTGT GGCGCTGTTT ATCGCTATCT TTATCTACTC TGGAAAAACG
GCAGCGCGTG TTGAGCGTGC CCACAGCGCA GTACGGGGAG CAAAATCTGC ATGA
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| Protein sequence | MVYPHADFDL SDLVSVWGKW AGGIFHFPGL SAETLLYRSF YSSEGMFGSI AAISWSFVFM
FILFGAFLVR SGVGDYIMDV SRAAAGKVVG GPGFIAVLAS GLMGSVSGSS VANTVSTGVI
TIPMMKKAGF PARFAAGVEA AASTGGQLMP PVMGAGAFIM ASYTQIPYVD IVAVSFIPAL
IYFLSVAFFV RIEAKRMGVQ IVTTSQEPFM KVLLSGWHNL IPLAVLVTLL VVGFTPTYAA
GLSILSVIVA SWFSKNHKMG PKAIIEALEQ GAKNMATTAV LLVGIGLVIN VISTTGIGNT
FSLMINNWAN GDLLTMLVLI TLASLVLGMG LPVTAAYIVL GTLSAPALYK LLAESQLVDL
MVSGQLPEQA KAIFMLAAPD QLSLLNAPMA AEKAHELISL VPADFVETLL QQSLGLEAIG
LALLSAHLII FWLSQDSNVT PPVCLTAFAA ATIAKTPPMR TGFTAWKIAK GLYLVPVLIA
YTQLISWDAT TVVTIGIFAI FGTYAMIGAI EGYLEGRLNL LWRLLLAVIG VLLVWPNLPI
WIRLVCVALF IAIFIYSGKT AARVERAHSA VRGAKSA
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