| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1117 |
|---|
| Symbol | tnaA |
|---|
| ID | 5134703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 1081033 |
|---|
| End bp | 1082451 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640531439 |
|---|
| Product | tryptophanase |
|---|
| Protein accession | YP_001215953 |
|---|
| Protein GI | 147671520 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3033] Tryptophanase |
|---|
| TIGRFAM ID | [TIGR02617] tryptophanase, leader peptide-associated |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAATT TTAAACACTT ACCAGAACCT TTTCGTATTC GTGTTATTGA ACCTGTTAAA
CGTACCACAC GGGAATATCG TGAAAAGGCG ATTTTAAATG CCGGAATGAA CCCCTTTTTG
CTCGATAGTG AAGATGTATT TATTGACCTG CTCACCGACA GCGGCACTGG CGCTATCACG
CAGGAGATGC AAGCCGCCAT GTTCCGTGGT GATGAAGCCT ACAGCGGCAG CCGCAGCTAC
CACGCACTCG CGAGAGCGGT TAAAGATATT TTTGGTTATG AATACACGAT TCCAACCCAC
CAAGGTCGTG GTGCAGAGCA GATTTATATT CCTGTTTTGA TTAAAAAGCG TGAAAAAGAG
AAAGGACTCG ATCGCAGTAA AATGGTCGCC CTATCTAACT ACTTTTTCGA TACCACTCAA
GGCCATACCC AAATCAACTG CTGTGTTGCT AAAAACGTGT ACACCGAAGA GGCATTTGAT
ACCGGTGTTA AAGCCGATTT TAAAGGTAAC TTCGACTTAG AAAAGCTCGA ACAAGCCATC
CTTGAAGCGG GCCCGGCAAA CGTCCCATAT ATTGTCAGCA CCATCACTTG TAACTCTGCG
GGTGGCCAGC CGGTTTCGAT CGCCAACTTA AAAGCCGTGT ATGAGATTGC CCAGCGTTAC
GACATTCCCG TGATCATGGA TTCTGCTCGT TTTGCTGAAA ATGCGTATTT TATTCAGCAA
CGTGAGCGCG ATTACCGCAA CTGGAGTATC GAAGAGATCA CGCGTGAAGC TTACAAATAC
GCCGATGGAC TCGCGATGTC GGCCAAAAAA GATGCCATGG TGCAAATGGG CGGTTTACTC
TGCTTCAAAG ACGAAAGCTT CTTTGACGTA TACACCGAAT GCCGAACCCT GTGTTTGGTG
CAAGAAGGCT TCCCTACATA CGGTGGCTTA GAAGGCGGTG CGATGGAGCG GTTGGCGGTT
GGCTTATATG ACGGTATGCG CCAAGATTGG CTCGCTTATC GCATTAACCA AGTGGAGTAT
CTGGTCAATG GTTTAGAAGC GATTGGGGTT ATTTGCCAAC AAGCTGGCGG CCATGCTGCG
TTTGTCGATG CGGGTAAACT GCTGCCTCAC ATCCCAGCAG ATCAATTCCC TGCTCACGCT
TTAGCTTGTG AACTCTATAA AGTCGCAGGC ATTCGCGCAG TAGAAATTGG TTCACTCCTG
CTTGGCCGTG ATCCTGCAAC CGGAAAACAG CATCCTTGCC CAGCCGAATT GCTCCGTTTA
ACCATTCCAC GCGCGACTTA TACGCAAACA CACATGGATT TCATCATCGA AGCATTTGAG
AAGGTGAAAG CCAATGCTCG TAACGTCAAA GGATTGGAGT TTACTTACGA GCCACCCGTG
CTACGCCACT TTACGGCTCG CTTAAAAGAA AAAGCCTAA
|
|---|
| Protein sequence | MENFKHLPEP FRIRVIEPVK RTTREYREKA ILNAGMNPFL LDSEDVFIDL LTDSGTGAIT
QEMQAAMFRG DEAYSGSRSY HALARAVKDI FGYEYTIPTH QGRGAEQIYI PVLIKKREKE
KGLDRSKMVA LSNYFFDTTQ GHTQINCCVA KNVYTEEAFD TGVKADFKGN FDLEKLEQAI
LEAGPANVPY IVSTITCNSA GGQPVSIANL KAVYEIAQRY DIPVIMDSAR FAENAYFIQQ
RERDYRNWSI EEITREAYKY ADGLAMSAKK DAMVQMGGLL CFKDESFFDV YTECRTLCLV
QEGFPTYGGL EGGAMERLAV GLYDGMRQDW LAYRINQVEY LVNGLEAIGV ICQQAGGHAA
FVDAGKLLPH IPADQFPAHA LACELYKVAG IRAVEIGSLL LGRDPATGKQ HPCPAELLRL
TIPRATYTQT HMDFIIEAFE KVKANARNVK GLEFTYEPPV LRHFTARLKE KA
|
|---|
| |