| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1111 |
|---|
| Symbol | cspA |
|---|
| ID | 5134721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 1076487 |
|---|
| End bp | 1076699 |
|---|
| Gene Length | 213 bp |
|---|
| Protein Length | 70 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640531433 |
|---|
| Product | cold shock transcriptional regulator CspA |
|---|
| Protein accession | YP_001215947 |
|---|
| Protein GI | 147671768 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAGA AAATGACTGG TTCAGTAAAA TGGTTCAACG AAACTAAAGG TTTTGGTTTC
ATCTCTCAAG ACAACGGCGG TCAAGACGTG TTCGTACACT TCAAGTCTAT CGTTTCTGAA
GGCTTCAAAA CTCTGGCTGA AGGCCAGCGT GTAAGCTTCA CCGTTGAGCA AGGCAAAAAA
GGCCCACAAG CTGCTCAAGT TACTGCGCTG TAA
|
|---|
| Protein sequence | MSQKMTGSVK WFNETKGFGF ISQDNGGQDV FVHFKSIVSE GFKTLAEGQR VSFTVEQGKK
GPQAAQVTAL
|
|---|
| |