Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_1096 |
Symbol | pepT |
ID | 5134913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 1061683 |
End bp | 1062915 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640531418 |
Product | peptidase T |
Protein accession | YP_001215932 |
Protein GI | 147671614 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2195] Di- and tripeptidases |
TIGRFAM ID | [TIGR01882] peptidase T |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAATC TTGTTGGGCG CTTTATGCGC TATGTCACTT TTGATACTCA ATCGAAACCG AAAAACCATC ACTGCCCAAG CTCTACGGGT CAGAAAGTCT TTGCCCAAGC GCTGTATGAA GAGCTACTTG AATTAGGCTT AAGTGATGTT TCGCTGGATG ATCATGGCTA TGTGATGGCC AAACTCCCAT CGAATGTGAA CTACCCAGTG CCCGCGATTG GCTTTATTGC CCACATGGAC ACCTCTCCAG ATGCTTGCGG TAAGCATGTT AAACCGCAAA TTGTTGAAGA TTATCAAGGC GGTGATATTG CCCTTGGTAA AGGGGATGAA GTGTTGTCGC CCATTCAATA CCCTGACTTG CATCTGCTGC ATGGCTATAA CCTCATCACG ACCGATGGCA CAACCTTATT AGGTGCAGAT AACAAAGCGG GGATTGCTGA AATCATCACC GCGATGGAAA TCTTGCTTGC TGATTCTTCG ATTCCCCATG GCGATATCTC GATTGCATTC ACGCCAGATG AAGAGATTGG CCGCGGTGCC AATCATTTTG ATGTGGCGAA ATTTGCGGCG CAGTGGGCAT ATACCATCGA TGGCGGCCCG ATTGGAGAGC TGGAGTATGA GAACTTCAAC GCCGCCACAG CGACGGTTGT TTGTCATGGA GTGAATCTGC ATCCGGGGAC AGCCAAAGAC AAAATGGTCA ACGCTATGCA CATTGCAGCG CAGTTTATTC TGATGATGCC AGAAAACGAA ACGCCTCAGC ATACCGAAGG CTATCAAGGT TTCTACCATC TTTCTGGCGC GACCATGAGT GTTGCCAAAT CAGAGCTCAA ATATATTTTG CGTGACTTTG AGGCGAGCGG TTTACAAGCT CGCCAAGCGT TAATGCAAGC CAAAGTAGCC GAGCTCAATC AGCAGCTTAA AAAAGGTCGT GTCGAGGTGA GTTTCGAGCA GAGCTACTCC AATATGAAGG AGAAGGTTGA GCCGCATCCA CATATTATTG AGCTGGCCAA ACAGGCGATG GTGGCTTGCG ATGTTGAGCC GAAAATTAAA CCTATCCGTG GTGGGACGGA TGGGGCGCGG TTGTCATTTA TGGGATTGCC TTGTCCAAAC ATTTTCACTG GTGGCTATAA TTTCCACGGC ATTCATGAGT TCATCACCAT TGAAGGGATG GAAGCTGCGG TACAAGTGAT TATGAAACTT GCAGAGAAAA CGGCACTGCA TTATCGACAA TAA
|
Protein sequence | MKNLVGRFMR YVTFDTQSKP KNHHCPSSTG QKVFAQALYE ELLELGLSDV SLDDHGYVMA KLPSNVNYPV PAIGFIAHMD TSPDACGKHV KPQIVEDYQG GDIALGKGDE VLSPIQYPDL HLLHGYNLIT TDGTTLLGAD NKAGIAEIIT AMEILLADSS IPHGDISIAF TPDEEIGRGA NHFDVAKFAA QWAYTIDGGP IGELEYENFN AATATVVCHG VNLHPGTAKD KMVNAMHIAA QFILMMPENE TPQHTEGYQG FYHLSGATMS VAKSELKYIL RDFEASGLQA RQALMQAKVA ELNQQLKKGR VEVSFEQSYS NMKEKVEPHP HIIELAKQAM VACDVEPKIK PIRGGTDGAR LSFMGLPCPN IFTGGYNFHG IHEFITIEGM EAAVQVIMKL AEKTALHYRQ
|
| |