| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1059 |
|---|
| Symbol | |
|---|
| ID | 5133936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 1032156 |
|---|
| End bp | 1033178 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640531380 |
|---|
| Product | PBSX family phage portal protein |
|---|
| Protein accession | YP_001215894 |
|---|
| Protein GI | 147671436 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5518] Bacteriophage capsid portal protein |
|---|
| TIGRFAM ID | [TIGR01540] phage portal protein, PBSX family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAGC AACTTATTCA CTCACACACT ACCGATGGCA CAGAGAGCAA ATCTGTGTAC
AGCTTTGACC CAAACCCGGA GCCCGTTGAT ACAAACAGTT GGATGACTCG TTATTGTGAG
CTGTTTTACA ACGAGTTTGA TGATTACTGG GAGCCGCCTA TTTCGTTAAA AGGGTTAGCT
GAAATTGCCA ACGCGAACGG GTATCACGGT TCACTGCTGA AAGCGCGGGC CAATTATGTG
GCTGGTCGCT TCCTGAGTGG TGGCAACATG CCTATGTACA AAATGAATAA TGCTTGCTGG
GATTATTTTG GCCTTGGTAT GGCAGCATTT GTGAAGATAC GCAGTTATAT GAAGAATGTG
ATCGCTCTTG AACCTTTGCC CATGGTTCAC ATGCGCAAGC GTAAGAACGG GGACTTTGTT
CAGTTGCTGC GTAACAACGA GCAAAAGGTA TTTAAAGCGA AGGATGTGAT TTTTATTCCC
CAGTATGACC CGCAGCAGCA GATATACGGC TTGCCTGATT ACTTGGGCAG CATTCAAAGC
AGTTTATTGA ACCGTGACGC CACCCTGTTT CGCCGCCGCT ATTACCTGAA CGGTGCGCAC
ATGGGCTTTA TTTTCTATGC GACCGACCCG AACTTGAGCG ATGACGATGA AAAGGCACTC
AAAGAGAAGA TTGCCAGTTC TAAAGGGATC GGTAATTTCC GCAGTATGTT TGTGAACATC
CCGAACGGGA CAGAGAAAGG CATTCAACTG ATTCCAGTGG GCGATATTGC CACGAAAGAT
GAGTTTGAGC GGATCAAGAA CATCACGGCG CAAGATATTT TTGTGGGGCA TCGTTTCCCA
GCAGGGATGG GCGGCATGAT CCCGCAGACA GACGCAACAG CACCAGACCC ACTCAAAGTC
AGCCAAGTTT ATGACAAGTA TGAAGTGGTT CCGGTGTGTA AGCGTTTTTC TGATGCAATC
AACAGTGACC CAGAGATACC GGAATCACTG TCTTTCAATT TTGATTTGAG CATCGAGGTT
TAA
|
|---|
| Protein sequence | MTEQLIHSHT TDGTESKSVY SFDPNPEPVD TNSWMTRYCE LFYNEFDDYW EPPISLKGLA
EIANANGYHG SLLKARANYV AGRFLSGGNM PMYKMNNACW DYFGLGMAAF VKIRSYMKNV
IALEPLPMVH MRKRKNGDFV QLLRNNEQKV FKAKDVIFIP QYDPQQQIYG LPDYLGSIQS
SLLNRDATLF RRRYYLNGAH MGFIFYATDP NLSDDDEKAL KEKIASSKGI GNFRSMFVNI
PNGTEKGIQL IPVGDIATKD EFERIKNITA QDIFVGHRFP AGMGGMIPQT DATAPDPLKV
SQVYDKYEVV PVCKRFSDAI NSDPEIPESL SFNFDLSIEV
|
|---|
| |