Gene VC0395_1058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_1058 
Symbol 
ID5134937 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand- 
Start bp1033175 
End bp1033852 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content45% 
IMG OID640531381 
ProductBRO domain-containing protein 
Protein accessionYP_001215895 
Protein GI147672232 
COG category[K] Transcription 
COG ID[COG3617] Prophage antirepressor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTTCAG TACTGACTTT TCAGGACACC CATTTTGATG TAGTTGAACG TAACAATCAG 
TTGTATCTCG ATGCGTACCA AATTGGTACG GCACTAGGTT ATAGCGATCC AAGAACTGCT 
GTACGTAAAA TTTTTAATCG TAACAAAGAT GAGTTTTCCA GTGGAATGTC TGAGGTCATC 
AATTTGATGA CCTCAGGAAA CTACCAAAAA TCCGTACGTA TTTTCTCACT GCGCGGCGCT 
CACCTCATCG CCATGTTCGC CAGAACGGCC ATCGCAAAAC AGTTCAGAAA GTGGGTGCTC 
GATATCCTCG ATCAAGAAAC CAAAACCCAA ACCATCATCC CCATTACCAC CCCAACGCAA 
ATTCCCAAAG CCAACTGGCC GATCACCTAC CAAACCGATT GGAAACCCGC CACCATCACG 
TTGTTTGGTA AAACCGCCCA CTATGTGCGT TTCGAGCTAA GACCCAAACC ATTCAGTTGC 
GAGTTCAGTG CAAAACACAC TCCGCAGGTT TATCAGGCGG TATTCCATTT CGCTGACCAA 
TACAAAAGAC CAAGTATCAG GAATGAAGCC CCAATGATTG GGGATATTGG CTATTTTGAA 
TCAACAAGGC TTGATGACTT ATGGGTACAA GTTATTAACT TTGCGGCAAG GTGCAATAGC 
CAATGTGCCT TGCTTTAA
 
Protein sequence
MTSVLTFQDT HFDVVERNNQ LYLDAYQIGT ALGYSDPRTA VRKIFNRNKD EFSSGMSEVI 
NLMTSGNYQK SVRIFSLRGA HLIAMFARTA IAKQFRKWVL DILDQETKTQ TIIPITTPTQ 
IPKANWPITY QTDWKPATIT LFGKTAHYVR FELRPKPFSC EFSAKHTPQV YQAVFHFADQ 
YKRPSIRNEA PMIGDIGYFE STRLDDLWVQ VINFAARCNS QCALL