Gene VC0395_1046 details

Gene Information

• Locus tag: VC0395_1046
• ID: 5134816
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: -
• Start bp: 1023199
• End bp: 1023786
• Gene Length: 588 bp
• Protein Length: 195 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640531368
• Product: lysozyme
• Protein accession: YP_001215882
• Protein GI: 147671795
• COG category: [R] General function prediction only
• COG ID: [COG3772] Phage-related lysozyme (muraminidase)

Plasmid Coverage information

• Num covering plasmid clones: 57
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATAA CTAAAAAAAT TTGGTGCTCA GTCGCCGCCG TGATCAGCCT TATCACGGGC 
GGGGCGATAG TCGGCCAAGA ATACGTACAG CCAGTTGGTC AAGTGGTGAT CGAAGGCCAA 
GCCCTTGGTG AACTACGCAT CAGCCCAAAA GGGCTAGAAA TTATTGGAAA CGCAGAAGGT 
TGCCGACAAG ACCCTTATAA ATGTCCGGCA GGTCTAATGA CTAATGGAAT TGGTAACACC 
CATGGTGTGC CGAATCACGT AGTGACACTT GAGCAAATTG CCAAAGATTG GGTGAAAAAC 
ATCAAAGAGG CAGAGCAATG TGTAACGGAC GCTGAACGTC TGTCTGGGCG AAGGTTGAAT 
CAAGGGCAGT TCGATGGTTT TACATCATTT GTTTTCAATT TTGGATGTAC CAAATTTCGA 
AAAAATAAAG ATGGGACAGA CACACGAATC TATCGAGCAA TTAAACAAGG ACGATTTATT 
CAAGGCTGCG GCCATATTCA AGAATGGGTG AAATTCGATG GAATAGTCCT GCCGGGGCTA 
GTCACTCGAA GAGGCTTGGA ATATGCCAGA TGTATGGAAG TGGATTAA 

 

Protein sequence

MKITKKIWCS VAAVISLITG GAIVGQEYVQ PVGQVVIEGQ ALGELRISPK GLEIIGNAEG 
CRQDPYKCPA GLMTNGIGNT HGVPNHVVTL EQIAKDWVKN IKEAEQCVTD AERLSGRRLN 
QGQFDGFTSF VFNFGCTKFR KNKDGTDTRI YRAIKQGRFI QGCGHIQEWV KFDGIVLPGL 
VTRRGLEYAR CMEVD