| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1039 |
|---|
| Symbol | |
|---|
| ID | 5134093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 1018862 |
|---|
| End bp | 1020061 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640531361 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001215875 |
|---|
| Protein GI | 147671782 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3299] Uncharacterized homolog of phage Mu protein gp47 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA GACCGCAGGC CGACTTTGTC GAAATACTCT CAGAATCGGG CGTGCCAGTT
ACTGAGGATG CCTTCGAGGC CGCGCTCAAA GCAGACGTGA CAGAGTCAGG AAGCCTCTTG
TCCAACGATT CGCAAATGTC ACCCTTCTGG CGTTGGGTTC GTGCTGCTGT TGTGACACCT
GCCGTGTGGC TGATCCGCAC ACTGCTCGCA GGGCATGTCA TGCCCAATAT CTTTGTGGGT
ACGGCGGAAC GTTGGGCGCT AGAGCTAAAA GCATGGGAAT ACAACGTCAC GCCCAAAGGC
GCAGTGAGCA CCCAAGGCTT AATCACCTTC ACCAAAGCCA ACGCCGCAGA TGAAACCAGT
ATCGAAGCAG GAACCATCAT TCAAACGCCA GAGATTGAAG GCAAGGTGTA CAAACTTACC
GCAATAAAAA CCACGGTGAT CAAAGCGGGG CAAGCCTCCG GCAAAGTCTT GTGTGAAGCC
AGTGAAGCGG GAGCCGCTTA CAACCTGCCC GCCGGCTATT TCAGCATTCT GCCGCAGGGC
GTATCGGGCA TTGTCTCTGT CACCAATGAA GCGAATTGGA TAACCCAACT CGGCGCAGAC
CAAGAAAGCG ACGAAGAATT AGCCCTACGC CTACAAAACG CCTTTACCAG TGCGGGCGAA
TGGCACATTG ACGATGTTTA CCGCGCCATG ATTGCCAGCG TGGCGGGGAT CCGTAGTGAT
AACATCTTCT TTGAAAACAC AGGCCACATC ACACCGGGTA GCGCGAATGC TTACATTCTG
ATGGAAGTGG GCGCAACGCC ACAGCATGTG CTTGACCAAC TCAATAAACA TATCATGCAA
GACGGCCACC ACGGCCACGG TGACGTGCTG ACTTGTTTAG CCATCCCAGA GACTCAGCAC
AGCATCAGTG CGCAGGTGGT CTTTGTCGCG AATCTCGATG AGATGCAGAA AATCAATGAA
CTGCTGGAAG TAGAAAACCG CATTCGTGCC GCATTCCGTG AAACAGCGGC TTATCCAGAA
ATGACCAGAG CGAAACCAGA AAGCCGATTC AGCATTTCAC AGCTCGCCCA TGAAATTCAC
AGCAAGATGG AGAACGTCGA ATCCGTACTC ATCAAAGTAG ACGGTGAACC AACCGACATC
ATCAGCTTGC TCACTCAACC CCGCTTACAA ACCCTCACCG TCACGGAGCT GGAACAATGA
|
|---|
| Protein sequence | MSKRPQADFV EILSESGVPV TEDAFEAALK ADVTESGSLL SNDSQMSPFW RWVRAAVVTP
AVWLIRTLLA GHVMPNIFVG TAERWALELK AWEYNVTPKG AVSTQGLITF TKANAADETS
IEAGTIIQTP EIEGKVYKLT AIKTTVIKAG QASGKVLCEA SEAGAAYNLP AGYFSILPQG
VSGIVSVTNE ANWITQLGAD QESDEELALR LQNAFTSAGE WHIDDVYRAM IASVAGIRSD
NIFFENTGHI TPGSANAYIL MEVGATPQHV LDQLNKHIMQ DGHHGHGDVL TCLAIPETQH
SISAQVVFVA NLDEMQKINE LLEVENRIRA AFRETAAYPE MTRAKPESRF SISQLAHEIH
SKMENVESVL IKVDGEPTDI ISLLTQPRLQ TLTVTELEQ
|
|---|
| |