Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_1025 |
Symbol | tnpA |
ID | 5135017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 1005832 |
End bp | 1006269 |
Gene Length | 438 bp |
Protein Length | 145 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640531347 |
Product | IS1004 transposase |
Protein accession | YP_001215861 |
Protein GI | 147672265 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1943] Transposase and inactivated derivatives |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGGCGACT ACAGAAGTTC ATCACACGTC TATTGGCGTT GCAAATATCA TATCGTTTGG ACACCAAAAT TTCGTTTTAA GATCTTAAAA GGTAATGTTG CCAAAGAGCT AAATCGTTCG ATCTACATTC TTTGTAATAT GAAAGATTGT GAAGTTTTGG AACTCAATGT TCAGCCAGAT CATGTCCACT TAGTTGCGAT AATTCCGCCC AAAGTATCGA TTTCGACGTT GATGGGAGTT TTAAAGGGTA GGAGTGCAAT TAGGCTATTC AACAAGTTTC CACATATCAG GAAAAAGTTA TGGGGAAATC ATTTTTGGGC GCGAGGCTAT TTTGTGGATA CGGTAGGTGT AAATGAAGAA ATCATTAGAC GGTATGTACG GCATCAAGAC AAAAAAGAGC TTGAGCAAGA GCAGCAGTTA GAGTTATTGA GAGACTAA
|
Protein sequence | MGDYRSSSHV YWRCKYHIVW TPKFRFKILK GNVAKELNRS IYILCNMKDC EVLELNVQPD HVHLVAIIPP KVSISTLMGV LKGRSAIRLF NKFPHIRKKL WGNHFWARGY FVDTVGVNEE IIRRYVRHQD KKELEQEQQL ELLRD
|
| |