Gene VC0395_0905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0905 
Symbol 
ID5134308 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand- 
Start bp897184 
End bp897810 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content43% 
IMG OID640531227 
Producthypothetical protein 
Protein accessionYP_001215741 
Protein GI147672098 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value0.772442 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCTTA ATTCACTACT ACTGTTTATA GTCGCTTGTC TTGCTATCAA TATGATACCA 
GGGCCAGACG TTATCTATAT TGTTTCAAAC ACAATGAAAG GTAAGTTGGT CACTGGGTTC 
AAAGCTGCAA TGGGACTTGG TGTAGGTTAT TTTGTTCATA CTTTAGCAGC TTCATTAGGA 
TTATCTGCAA TTATCCTCAG CTCAGCGGTA GCTTTTAGCG CAGTCAAATG GTTGGGTGCT 
GCTTATCTAG TCTATTTGGG TGTTCAGTCG TTACTTTCAA TGTGGCGTGG GGGTAGCACA 
TTGAAAGTAA GTGAAAGCGT TGAAAGTGAC AAAAATGTAT TTGTACAAGG CGTAATTGTT 
AGTGTATTAA ACCCGAAAGT TGCACTGTTC TTCCTTTCGT TCCTGCCTCA GTTTATTGAC 
ACATCATCAG GTTCGGCTTC GATGCAATTA TTGTGGCTTG GTTTGTTATT TAGCGTACTG 
GCTACAATGT GTAATATCCT GTATGCGTCA GTAGGTAGTT GGGGCTTTAG TCGCCCGAAT 
TCTCAGCGCT ACTCGCGAGG GCTAGAGGGC GTATCTGGTG TTTTACTTAT TGGGCTAGCA 
AGCAAAGTTG CGATCAGCGA TCGCTAG
 
Protein sequence
MDLNSLLLFI VACLAINMIP GPDVIYIVSN TMKGKLVTGF KAAMGLGVGY FVHTLAASLG 
LSAIILSSAV AFSAVKWLGA AYLVYLGVQS LLSMWRGGST LKVSESVESD KNVFVQGVIV 
SVLNPKVALF FLSFLPQFID TSSGSASMQL LWLGLLFSVL ATMCNILYAS VGSWGFSRPN 
SQRYSRGLEG VSGVLLIGLA SKVAISDR