Gene VC0395_0821 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0821 
Symbol 
ID5134750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand- 
Start bp851608 
End bp852300 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content34% 
IMG OID640531143 
Producthaemagglutinin associated protein 
Protein accessionYP_001215657 
Protein GI147672291 
COG category[L] Replication, recombination and repair 
COG ID[COG0863] DNA modification methylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value0.893321 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGGTT ATGCGTTTCC CTCGATATTA GGCAATTTAA TGTCAAAAAT TTATCAAATG 
GATGCGGTTG ATTGGCTTAA AACACTTGAA AATTGTAGTG TTGATCTGTT CATCACTGAT 
CCACCATATG AATCGCTAGA AAAATATAGA CAAATAGGTA CGACTACACG GTTAAAAGAG 
AGTAAATCAT CGAGCAATCA ATGGTTTAGT GTTTTTCCTA ACACTAGGTT TGAAGAGTTG 
TTTCGTGAAG TTTATAGAGT GCTAAAAAAA GGTTCTCATT TCTATTTATT TTGCGACCAG 
GAAACTATGT TTTTGGCGAA ACCAATAGCG GAAAGTGTAG GCTTTAAATT TTGGAAGCCT 
ATAGTTTGGG ATAAGTGTGC TATAGGTATG GGATATCATT ATCGTGCTAG ATATGAATTT 
ATTCTATTTT TCGAGAAAGG AAAGAGAAAG TTAAATGATT TAAGTGTTCC TGATGTGTTG 
GAATATAAGA GAGTTTGGAA AGGCTACCCA ACAGAAAAGC CAGTTGAACT TCTGGAGGTT 
TTGATTAGGC AAAGCTCTTC AGAAAATGAA ATTGTAGCGG ATTCATTTTT TGGTTCAGGC 
TCAACTTTAA TTGCAGCTAA TAATCTCTCT AGAAAATACA TTGGTTGTGA TATATCAAGT 
TCTGCACATG AGTATTTTAA GAATAGAGCT TGA
 
Protein sequence
MLGYAFPSIL GNLMSKIYQM DAVDWLKTLE NCSVDLFITD PPYESLEKYR QIGTTTRLKE 
SKSSSNQWFS VFPNTRFEEL FREVYRVLKK GSHFYLFCDQ ETMFLAKPIA ESVGFKFWKP 
IVWDKCAIGM GYHYRARYEF ILFFEKGKRK LNDLSVPDVL EYKRVWKGYP TEKPVELLEV 
LIRQSSSENE IVADSFFGSG STLIAANNLS RKYIGCDISS SAHEYFKNRA