Gene VC0395_0726 details

Gene Information

• Locus tag: VC0395_0726
• ID: 5134303
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: +
• Start bp: 787322
• End bp: 789205
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640531048
• Product: GGDEF family protein
• Protein accession: YP_001215562
• Protein GI: 147672530
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.0254772
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACCGA TCCTTTCACA CTCGATCCCG ATCCCTTCTA GCATGCAGGC AAATTGGCAG 
CAGATGCTCA ACCTGCTGGC CGAAGTGCTG AAAGTCTCAG CCACCCTGAT CATGCGTTTA 
CGCCATCACG ATCTTGATGT GTTTTGTACC AGTGTCGGCA GTGACAATCC ATACCAAGTC 
GGCATGACCG AACGATTAGG CACAGGCTTG TATTGTGAAA CTGTGGTCAA TACTCGCCAG 
ATATTGTTAG TCAGTAACGC CGACCTCGAC CCATTGTGGA AGGATAACCC AGATCTGGAA 
TTGGGCATGC GCGCTTACTG TGGCGTACCA TTGCAATGGC CAAACGGTGA GCTTTTTGGA 
TCTTTGTGTG TCACCGATCG TCAAGCTCGC CAGTTTCTTA GTACCGATCA GCAATTGATA 
AAAACCTTTG CTGAATCGAT TGAAGCTCAG CTTAAAACCC TTTACCAACG CGAAACGTTG 
TTGCAAATGA ACCAAGATTT GCACTTCAAA GTTCGTCATA AAATGCAAAG CATCGCCTCG 
CTGAACCAAT CTCTCCATCA AGAGATCGAT AAACGCCGTG CCGCAGAACA GCAGATTGAG 
TATCAGCGCA GTCACGACCT TGGGACTGGC TTTCTGAATC GCACGGCATT GGAGCAGCAG 
CTCGCGATGC AGCTGGCTCA ATTGGCGGAA CACGAAGAGC TCGCTGTGAT TCATATCGGT 
TTTGCCAATG CCCGCCAATT ACAGGCGCGG CTGGGTTACC ACCTTTGGGA TGATGTGCTA 
AAGCAGTTAC GTGAGCGACT TGGTCCGGTG ACGGAGGGGG AATTACTGAC CGCTCGCCCT 
AACTCGACCA ATTTGACGCT GATCTTAAAA GCCCATCCGC TCGACACCCA ATTAAATCAG 
CTTTGCCATC GTTTAATTCA CGCTGGGCAA GCGCAATTTG TGACGGAGGG GCTGCCCGTT 
CACCTCAACC CTTATATTGG TGTGGCCCTT AGCCGTGAAA CACGCGATCC GCAGCAGCTA 
CTGCGCCATG CCGTCAGCAG CATGTTGGCG TGTAAGGACT CGGGATACAA AGTGTTTTTT 
CACTCTCCCG CATTAGCCGA TAACCATGCA CGGCAAAATC AATTGGAAAA CTATTTACTG 
CAAGCGGTGC GCAACAACGA TCTGCTGCTC TACTTCCAAC CTAAAGTCAG CATGAAAACC 
CAGCGCTGGG TCGGTGCTGA GGCATTGTTG CGTTGGAAGC ATCCGGTGTT GGGTGAATTT 
TCCAATGAAA CCTTGATTCA TATGGCAGAG CAAAATGGTC TTATCTTTGA AGTGGGGCAT 
TTTGTTTTGC ACCAAGCTTT AAAAGCCGCC AGTGATTGGT TAGCGGTGTG CCCAACCTTT 
TGTATCGCGA TCAATGTCTC TTCCGTACAG CTCAAAAACA GTGGCTTTGT CGAGCAGATT 
CGAGATCTGC TGGCGCTGTA TTGCTTCCCT GCGCATCAGT TGGAACTGGA AATCACCGAA 
AGTGGCCTGA TCGTCGATGA GCCGACCGCG AGTGATATTC TCAACCGACT ACACACATTA 
GGCGTGACAT TATCACTCGA TGATTTTGGT ACGGGTTACG CTTCGTTTCA GTATCTAAAA 
AAATTCCCAT TTGATGGCAT CAAGATTGAT AAAAGTTTTA TGGAGCAGAT CGAACACAGC 
GAAAGCGATC AAGAAATCGT GCGTTCTATG CTGCATGTAG CGAAAAAACT GAACTTAAAC 
GTGGTGGTGG AAGGTATTGA GTCGACGCAG CAAGAGCAGT TCATTCTGGA ACAGGGTTGC 
GATGTCGGCC AAGGCTTTTT ATATGGCAAA CCTATGCCCA GTGAAGTGTT TACCCTCAAG 
CTCGAAAGCC ACGCTCTGGC GTAA 

 

Protein sequence

MAPILSHSIP IPSSMQANWQ QMLNLLAEVL KVSATLIMRL RHHDLDVFCT SVGSDNPYQV 
GMTERLGTGL YCETVVNTRQ ILLVSNADLD PLWKDNPDLE LGMRAYCGVP LQWPNGELFG 
SLCVTDRQAR QFLSTDQQLI KTFAESIEAQ LKTLYQRETL LQMNQDLHFK VRHKMQSIAS 
LNQSLHQEID KRRAAEQQIE YQRSHDLGTG FLNRTALEQQ LAMQLAQLAE HEELAVIHIG 
FANARQLQAR LGYHLWDDVL KQLRERLGPV TEGELLTARP NSTNLTLILK AHPLDTQLNQ 
LCHRLIHAGQ AQFVTEGLPV HLNPYIGVAL SRETRDPQQL LRHAVSSMLA CKDSGYKVFF 
HSPALADNHA RQNQLENYLL QAVRNNDLLL YFQPKVSMKT QRWVGAEALL RWKHPVLGEF 
SNETLIHMAE QNGLIFEVGH FVLHQALKAA SDWLAVCPTF CIAINVSSVQ LKNSGFVEQI 
RDLLALYCFP AHQLELEITE SGLIVDEPTA SDILNRLHTL GVTLSLDDFG TGYASFQYLK 
KFPFDGIKID KSFMEQIEHS ESDQEIVRSM LHVAKKLNLN VVVEGIESTQ QEQFILEQGC 
DVGQGFLYGK PMPSEVFTLK LESHALA