Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0722 |
Symbol | |
ID | 5134736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 782136 |
End bp | 784583 |
Gene Length | 2448 bp |
Protein Length | 815 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640531044 |
Product | hypothetical protein |
Protein accession | YP_001215558 |
Protein GI | 147672186 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000000480127 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGCCT TGCCTCCCGC ATCGCTCAAT CGCCGCTTAC TGCGTTGGAG CTTAAGTGAA ATTCGTCACG GGCAGTTATG GCCGGTGACT GTTGCGCTAA CCTTAATCAT TGCCTCGATT TTTGCATTAA CCGCGCTCGC GCAGCGTATG GAACAAGTGA TTGTGAAACA AGGGCGTGAT GCGTTAACCG CTGATACGGT ATTTGTTTCG GGCAACCCAC TTCCTGAGTC CTTATTGACC CTGACCGCGC AGCAAGCTAG TCAAACTTCA CAAATGACCC GTTTTGCGAC CATGGCCTTT AGCGATCAAG GCATGCAGTT AGTCACTGTC AAAGCGGTAG ATAGTGCTTA TCCACTGCGT GGCGAGATGC GTTTAAGTGA TGGTCAGCAA ACCTTTAATC ATGTGGTGAG CAACCAACTT TGGCTTGAAC CGCGAGTAAA AGATCAGTTA GGGGTGGATA TCGGTGACAA TGTCACGATT GGTGATGCGG ATTTTGTGGT CAGCGGTGAA GTGTTGGAAG AGCCAGGACT GAGCTTTAAC CCATTCCAGC AAATGCCATC GGTTTACATC CATGCCTCTG ATGTGGATAA AACTGGCGCG ATTCAGCCGG GGAGTCGGGT GCAATTTAGC CTATTTATGA CTGGTGATGA CTCTGCGATT GAATCGATAA AACAACAAGT GAGCTTAACG GCGAGCGATC GCTGGCGTGA TCAAGAAAGT GGCAGCCGTA CTAATGAGGT GTTTGCACGC ACTCAACAGT ACTTATCGCT GACTGTAGCA ATTGTGATCT TGATGGCCGC GACCACCTTA GTGCTGACCT GTCAGCATTA CGTTTCCACC CGCACGCATA CGATTGCGAT GTTAAAAAGT CTCGGAGCAA GTCGCCGCTG GTTACGCCAT TGGCTAGCGT TGCAAGTCGG ATTGTTACTG GTATTTGCGG TGGTGTTGGG CAGCGTTATT GGTGTTGGGT TGGAGTCGCT GCTGCGTTTG CCACTAAAAG ATTTGTTGCC CGACCCGCTC CCCAGTTACG GTTTGCGTCC GCTGTGGATT GCACTTGCCA GCAGCTTATT GATTGCGGTG CCAGCTCTGG GGATCCCGCT GGGACGTCTA TTGAGCGTGA GTGCGGTTGC GGTCATGCAG CCGGTGGCGG CGCAAACTCG TTGGCAGCGC AATCTACTGC TGATCATGGT ACCGATTGTG CCGCTACTGC TGGTGTATGG GCAAAACCAA CTGATCTGGA TTGTGCTGAT CGGTATTGTG GTGCTGTTTG CGGTGTTAGC GGTGGTCAGT GTTTTGGTGA CTCGTCTGCT GGCTAAGCTA CCGCTTAATC CTGCGATGGC ATTGGCTCTG AGCCGAATTA ACCGCTCTGT TGCAGCAAGT GGTTTGCAGT TTGGCGCGTT AGCTCTCTCT TTGATGTTGC TCGCCATCAT CTGGTTAGTG CGTACCGATT TGCTCTCAGA TTGGCAGCGC ACCTTGCCGG AAAATGCGCC GAATGCGTTT GCACTCAACA TCAGTGAATC CGAAAAGGCC AGTTACCTTG CGGCATTAGA TACAGCAAAC ATTGAGCGCT CTGCTGCTTA TCCCATCATG CGTGGGCGTT TAACGCATAT TAACGGTCAA GAGGCGAAAC AATACGCGCA AAATGGTGAA GAGAGTTCAG ATGCGCTGCG CCGTGAGCTG AATTTAACCT GGGCAGAGCA GTTACCCGAT TACAACCCCA TTTTGCAAGG AGAGTGGCAA AGCCAAAATG GCGTATCGGT TGAGCAGGAA GTGGCGAGCG ACCTCGGGCT TAAACTTGGG GATACGCTGA CGTTTATGAT CAATAGTCAA ACAGTGAGCG CGCAAGTGAA CACCATTCGT CAGGTCGAGT GGCGTGAAAT GAAGCCCAAT TTTTACTTCA TTTTTAGTCC GGACGTGGTG CAAAACTTGC CAGCCAGTTA TTTGATCAGT TTCCGCATTC AGCCCGAACA TGATGCGTTG CTCGGTCAGC TCTCACGGCA ACACCCGACG GTGAGCTTGA TGGACATTCG CACCATGGGA GCCAAAATCC AAGCCTTGTT GACCCAAATT GTTTGGTCTG TGACGGTGTT GGCGGCACTG GGTGTGCTAG CAGGGGTATT GCTGATTTTT ACTTTGCTGC GCTTAAGCCT CAGTCAGCGT CAGCAGGAGA TCCGCCTGTA TCGCACGTTA GGGGCGAGTC GCCGCCGAGT TATGCACACC ATTTGGGCTG AGTATGGAGT GATGGCGTTA GTCGGAGGGT TAGTGGCCAG CGTGAGTGCT GATGCAGTCG TCGCTGCGGT CATGAAATGG GGATTTAGCC TGACTCCGAG TCTGCATATG GCGCTGTGGT TTGTGCTCCC TGCGTTGACT TTTTGCACAC TTGCTGCGGT TGTGAGCAGT TTGTTGAAAC GCCTGTTAGC CCCCGTCAAT AAAGCCTTCA GCGATTGA
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Protein sequence | MKALPPASLN RRLLRWSLSE IRHGQLWPVT VALTLIIASI FALTALAQRM EQVIVKQGRD ALTADTVFVS GNPLPESLLT LTAQQASQTS QMTRFATMAF SDQGMQLVTV KAVDSAYPLR GEMRLSDGQQ TFNHVVSNQL WLEPRVKDQL GVDIGDNVTI GDADFVVSGE VLEEPGLSFN PFQQMPSVYI HASDVDKTGA IQPGSRVQFS LFMTGDDSAI ESIKQQVSLT ASDRWRDQES GSRTNEVFAR TQQYLSLTVA IVILMAATTL VLTCQHYVST RTHTIAMLKS LGASRRWLRH WLALQVGLLL VFAVVLGSVI GVGLESLLRL PLKDLLPDPL PSYGLRPLWI ALASSLLIAV PALGIPLGRL LSVSAVAVMQ PVAAQTRWQR NLLLIMVPIV PLLLVYGQNQ LIWIVLIGIV VLFAVLAVVS VLVTRLLAKL PLNPAMALAL SRINRSVAAS GLQFGALALS LMLLAIIWLV RTDLLSDWQR TLPENAPNAF ALNISESEKA SYLAALDTAN IERSAAYPIM RGRLTHINGQ EAKQYAQNGE ESSDALRREL NLTWAEQLPD YNPILQGEWQ SQNGVSVEQE VASDLGLKLG DTLTFMINSQ TVSAQVNTIR QVEWREMKPN FYFIFSPDVV QNLPASYLIS FRIQPEHDAL LGQLSRQHPT VSLMDIRTMG AKIQALLTQI VWSVTVLAAL GVLAGVLLIF TLLRLSLSQR QQEIRLYRTL GASRRRVMHT IWAEYGVMAL VGGLVASVSA DAVVAAVMKW GFSLTPSLHM ALWFVLPALT FCTLAAVVSS LLKRLLAPVN KAFSD
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