| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0716 |
|---|
| Symbol | |
|---|
| ID | 5134779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 776500 |
|---|
| End bp | 777240 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640531038 |
|---|
| Product | LamB/YcsF family protein |
|---|
| Protein accession | YP_001215552 |
|---|
| Protein GI | 147671685 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1540] Uncharacterized proteins, homologs of lactam utilization protein B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.0495612 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAAAC GGACAATCCA ACTCAATTGC GATATGGGCG AAAGCTTCGG CGTCTGGACC
ATGGGGGCCG ATGAAGAAGT GATGCCTTGG ATTGATATGG CCAATATCGC TTGTGGCTTT
CACGCGTCCG ATCCTCATGT TATGAGCCGT ACGATAGATT TAGCGCTTGA GCATGAAGTG
ATGATAGGTG CCCATCCTAG CTACCCAGAT TTGCAAGGAT TTGGGCGCCG CTCGTTGGCG
ATGAATGAGC AAGAAGTGAG TGAAATCATT CTTTACCAAG TCGGCGCACT GAAGGCGCTG
TGTGAAAGTA AAAATGGCCA ATTGAGCTAT GTGAAGCCTC ATGGCGCGCT GTATAACGAC
ATGATGAGCG ACCCGAGCAT CTTTCGTGCG GTGGTCGATG CCGTTTCCTG TTTTAACCTG
CCTCTGATGG TGCTCGCTTC TGCCAACAAT CAAGACTATC TCGATATTGC GGACCGTTTT
GATGTACCAC TGCTGTTTGA AGCTTTTGCC GACCGTACCT ATCTCGCCAA TGGCAAGCTG
ACACCGCGCT CACAACCCAA TGCGGTACTC AGTAGCGAAG AAGCCATTCT CAACCAAGTG
CGACAAATCG CCCGTTATGG CAAAGTCACC AGTTCTGATG GGTTCGTTAT CCCGATTGAA
GCAGATACTT TATGTGTGCA CGGCGATAAC CCAAACGCCG TGTCGCTCAT TGCCAGAATT
CGTGCTGCGT TGGATGAGTA G
|
|---|
| Protein sequence | MSKRTIQLNC DMGESFGVWT MGADEEVMPW IDMANIACGF HASDPHVMSR TIDLALEHEV
MIGAHPSYPD LQGFGRRSLA MNEQEVSEII LYQVGALKAL CESKNGQLSY VKPHGALYND
MMSDPSIFRA VVDAVSCFNL PLMVLASANN QDYLDIADRF DVPLLFEAFA DRTYLANGKL
TPRSQPNAVL SSEEAILNQV RQIARYGKVT SSDGFVIPIE ADTLCVHGDN PNAVSLIARI
RAALDE
|
|---|
| |