| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0683 |
|---|
| Symbol | glpF |
|---|
| ID | 5134265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 748108 |
|---|
| End bp | 748962 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640531005 |
|---|
| Product | glycerol uptake facilitator protein |
|---|
| Protein accession | YP_001215522 |
|---|
| Protein GI | 147672325 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
|---|
| TIGRFAM ID | [TIGR00861] MIP family channel proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 0.962847 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAAA CAAAGCAACA TACTCTGCTC GGGCAGTGTA TCGCCGAGTT TATCGGTACA
GGATTACTGA TTTTCTTCGG CGTCGGCTGC GTGGCCGCAC TCGTTTTAGC AGGTGCTCAA
TTCGGACAGT GGGAAATCAG CATTGTCTGG GGTTTTGGCG TATCGATTGC CATTTATTGT
ACGGCTGGGG TTTCTGGCGC GCACATTAAC CCTGCCGTCA CTATCGCTCT GGCCGCTTTC
CACGGTTTTG ATAAAGCGAA AGTATTACCT TACATCATTT CGCAAGTGGC TGGTGCGTTT
TGTGCGGCGG CACTGGTCTA CAGCTTGTAC AGCAACCTTT TTACCGACTA CGAAATCGCC
CACAATTTTG TACGTAGCAG CCAAGAAGCC TTAGCGACTG CGGGGATCTT CTCAACTTAT
CCGCATGCTT CTCTCTCTTT TATGGGAGCC ATGGCCGTTG AGTTCACCAT TACAGCGGTA
CTGATGTTCG CGATTTTGGC GTTGGGTGAT GAAAACAATG GCGCGCATCG CAATGCGATG
AACCCCTTGC TAATTGGTAT TTTGATTGCG GTGATTGGTG GCTCATTAGG CCCATTGACG
GGATTTGCCA TGAACCCTGC GCGTGATTTC GGTCCTAAAC TGTTTGCCTA CTTCGCGGGA
TGGGATTATG CCCTAACTGG CGCAAAAGAG ATCCCTTACT TCATCGTACC GATTGTGGCT
CCGATTCTGG GCGCATGTTT TGGCGCGTGG GCATATCCAA AGTTTATCGC GGCTTATCTG
CCAAAAACGG GTACGGGTTG CACTATTCCG AACCAATGTG ACACGGCAGA AGAGAGTGAA
GAAGCGCGCG CATAG
|
|---|
| Protein sequence | MNQTKQHTLL GQCIAEFIGT GLLIFFGVGC VAALVLAGAQ FGQWEISIVW GFGVSIAIYC
TAGVSGAHIN PAVTIALAAF HGFDKAKVLP YIISQVAGAF CAAALVYSLY SNLFTDYEIA
HNFVRSSQEA LATAGIFSTY PHASLSFMGA MAVEFTITAV LMFAILALGD ENNGAHRNAM
NPLLIGILIA VIGGSLGPLT GFAMNPARDF GPKLFAYFAG WDYALTGAKE IPYFIVPIVA
PILGACFGAW AYPKFIAAYL PKTGTGCTIP NQCDTAEESE EARA
|
|---|
| |