Gene VC0395_0633 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0633 
SymbolsecD 
ID5135000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp692147 
End bp693985 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content48% 
IMG OID640530955 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001215472 
Protein GI147672028 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAA AAACACAAAA TCAGGCGGCG AAACGCCTGA TCAACCACTA TTCCGCTTGG 
AAGTATGTGG TTCTGATAAC CACCATCATC ATTCTAACCT TAAGTGCTAT TCCTACTTGG
TATGGCGAAC AACCTTCTAT TCAGTTGCAA TCTAAAGATG CAACGAGTGT ATTACGCAAC
GTTCCTGAGC TGACGCAATT GCTCAATAAG CAAAACATTC AGGCCGATGA AATTACCCAA
CAAGGGGATA ACACCACCTT GGTTTTTGCC AACGAAACGC AGCAATCACA AGCCAGAAAT
GTACTGGATG CGCTTGTGAA AGAAGGGGAT ACGATCACGT ATTCTTATGT GTCTGTTGCG
CCAAAGTGGC TAGGCAATTT GGGTTTTTCA CCCATCAAAT TAGGCTTGGA TTTACGCGGG
GGCGTACAGT TTCTGCTGAA TGTGGATGTC GATAAGGCCT TCCAAGAACA GCGCGACAGT
ATGATGGATG CAGTAAAAGA TTCGCTGCGT ACAGAGCGTT TGCGCGGTGT CTCGGTGCAA
GCGATGGGTA ATGATGCTTT TGAGGTCAGA ACTGAACAGC CGCAAGCCTT GAGCCATGTA
CGCAAATACT TGCAAGAAAA TTATCGAGGC TGGGAGATTC GTCAAGGCTC AGATCAGTTG
CAGGTTCAGC CATCACAACA AAATAAATCC GAGTTTCAAA CTGCGACGAT TCAACAGAAC
TTGAAAATCA TGCGTGATCG GATTGAAGAA CTTGGGATTA CAGAAGCTCT GGTTCAACGC
CAAGGTGAAC ATGCGATCCG TATTGAGCTG CCCGGTGTGC AAGACCCCTC ACAGGCGAAG
AATGTGATTG GTGCGACCGC AAGTTTGGCG TTTTATGAAG CAAAATCTCC AACGGATGCG
CGCAGTTACG ACGATTTAAT CCTAGAAGAT GGCAATGGAC GTCCTGTGAT TCTGGCTAAG
CGTCCAGTGC TGAGTGGCGA GCATATCGTC AATGCCCGTG CGGGTGTGGA CAACATGGGT
ATGTCTGAGG TGAACATTTC ACTGGATCAC GCAGGCGGCA AAATCATGAG TGATTTTTCC
GGTAAACACA TTGGCAAACC GATGGCGACC GTCTATCGCG AATATAAAAC CAATGCGCGT
GGCGAAACCG TTCGCAGTGA GAAAGTGATC AGCGTTGCCA CCATTCAATC TCAATTGGGG
AGCCAATTTC GTATTACGGG CGCAGGTTCA ATGGAAGAAG CACAGCAGCT CGCCCTACTG
TTGCGTGCAG GCTCGCTGAC GGCACCTGTC ACCATTGTTG AAGAGCGCAC CATCGGTGCT
TCTTTGGGTG AAGAAAATAT TGCCAACGGT TTTGCTGCTT TGGCGCTTGG TATGGCAATG
ACGCTGACTT TCATGGCGCT TTGGTATCGC CGCTTGGGTT GGGTGGCAAA TGTCGCTTTG
TTGGTCAACA TGGCTTGTTT GTTGGGTCTG ATTGCTTTAT TGCCAGGGGC AGTATTGACC
CTACCAGGTA TTGCAGGTTT GGTGTTAACC GTGGGTATGG CGGTGGATAC TAACGTGCTG
ATCTTTGAAC GTATTCGCGA CAAACTCAGT GAAGGGCGTA ACTTTGCACA AGCTATTGAT
ACCGGTTTTG ACAGTGCTTT CAGCACGATT TTAGATGCCA ACATTACCAC CATGATCACG
GCAGTCATTC TGTATTCGAT TGGTAATGGT CCTATCCAAG GCTTTGCTTT GACTTTGGGC
TTAGGCCTAC TCACCAGCAT GTTCAGTGGC GTATTCGCTT CACGAGCATT GATTAATTTG
GTTTGGGGAC GCGATACGCG TCGTGATGTG AGGGTATAA
 
Protein sequence
MKKKTQNQAA KRLINHYSAW KYVVLITTII ILTLSAIPTW YGEQPSIQLQ SKDATSVLRN 
VPELTQLLNK QNIQADEITQ QGDNTTLVFA NETQQSQARN VLDALVKEGD TITYSYVSVA
PKWLGNLGFS PIKLGLDLRG GVQFLLNVDV DKAFQEQRDS MMDAVKDSLR TERLRGVSVQ
AMGNDAFEVR TEQPQALSHV RKYLQENYRG WEIRQGSDQL QVQPSQQNKS EFQTATIQQN
LKIMRDRIEE LGITEALVQR QGEHAIRIEL PGVQDPSQAK NVIGATASLA FYEAKSPTDA
RSYDDLILED GNGRPVILAK RPVLSGEHIV NARAGVDNMG MSEVNISLDH AGGKIMSDFS
GKHIGKPMAT VYREYKTNAR GETVRSEKVI SVATIQSQLG SQFRITGAGS MEEAQQLALL
LRAGSLTAPV TIVEERTIGA SLGEENIANG FAALALGMAM TLTFMALWYR RLGWVANVAL
LVNMACLLGL IALLPGAVLT LPGIAGLVLT VGMAVDTNVL IFERIRDKLS EGRNFAQAID
TGFDSAFSTI LDANITTMIT AVILYSIGNG PIQGFALTLG LGLLTSMFSG VFASRALINL
VWGRDTRRDV RV