| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0621 |
|---|
| Symbol | |
|---|
| ID | 5134375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 676852 |
|---|
| End bp | 678147 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640530943 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001215460 |
|---|
| Protein GI | 147672469 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2206] HD-GYP domain |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATGGT CAGAAATAGG CTGCACTATG AAATCGGTAA ATATCGAATG GAACGTCAAT
CTAAGGCAGG CATTTTTTTG TATCGCAAGA GCGCTCGACT CGGTCGGTGT GGATGATATC
AATCACGGGC ATCGTGTCGG TTATATGGCC TATTCTTGTG CTCAAGCCAT GGAGTGGAGC
GAAGAGGAGT GTCAACTGGT GTTTGCGCTG GGTTTGATTC ATGACTGTGG CGTGGCTCAG
AAGCGTGATT TCTATCGTTT ACTCGAAAAT ATGCAACCCG ACAATACCCA GCAGCATTGC
GTGCGAGGCA ATGAGTTGCT GTCGAATTGT CCACCGCTTG CGCCGTTTGC GGATGCGATT
TTGTACCACC ATACGCCTTG GGATGAGCTG AAAAATATTG CTATTTCGGA TCGAAACAAA
CGGTTCGCGG CGTTGATTTT TTTAGCGGAT AGAGTGGATT ACCTTAAAGA GCTCTATCCA
AGAGATGAGT ATGGCAATGT GACTCAGGAA GCTCGTAATC AAGTCTGTTT AGAAATTGGT
CGATTGAGCG GAAGCTTGTT CGAGCGTGAC TTGGTACGCA CCATGCAACA TTTGCTGAGT
AAAGAGTTCA TCTGGTTTTC AATGGAGCAT CATCATATTG AAGCGATGGG TCACAATTTG
CCACCCACCC CATTTTTTGA GCAGAAGTTG GGGGTGGAAG AGATCATGTC TATCGCGATG
TTAATGGCAA ACGTGGTGGA TGCGAAAAGC CAGTTCACTT TTCAGCATTC GCAAAAAGTA
GCAGAGCTCT GTCAGCACTT AGCGAAAGAG CTGGGGCTAA ACGTGGAGAT GCAAAAAGCC
CTTTACCTGA CAGGATTGGT TCACGATATC GGCAAGCTGC ACACCCCAGA AGAGATCTTG
CATAAACCCG GTAAACTCAA CGAGAGCGAG TATCTTTGTA TTCAACGCCA TTCGACCGAT
TCTCGTTATA CCTTGCAAAT GGTGTTTGGC CAGTCTGTGG TGTGTGAGTG GGCAGGAAAC
CACCATGAGC GTTTAGATGG TTCGGGTTAC CCAAGAGGAC TCCAAGGATC GGCGATTGAT
CTGCCTTCAC GGATCATTGC GATTGCGGAT GTGTTTCAGG CGCTTACCCA AGCAAGGCCA
TATCGCGGCA GCATGTCGCT CAACGAGGTG ATGAATATCA TGCGTCACGA AGTGAGTTGT
GGTCGGTTAG ATAGCCAAGT GTTTGATGTG ATTGTGCGCA ATAGCCAGAA ATATTATCAG
CTCTCGATAG CGGAAAGCTC AACCGAATGG GCATAA
|
|---|
| Protein sequence | MRWSEIGCTM KSVNIEWNVN LRQAFFCIAR ALDSVGVDDI NHGHRVGYMA YSCAQAMEWS
EEECQLVFAL GLIHDCGVAQ KRDFYRLLEN MQPDNTQQHC VRGNELLSNC PPLAPFADAI
LYHHTPWDEL KNIAISDRNK RFAALIFLAD RVDYLKELYP RDEYGNVTQE ARNQVCLEIG
RLSGSLFERD LVRTMQHLLS KEFIWFSMEH HHIEAMGHNL PPTPFFEQKL GVEEIMSIAM
LMANVVDAKS QFTFQHSQKV AELCQHLAKE LGLNVEMQKA LYLTGLVHDI GKLHTPEEIL
HKPGKLNESE YLCIQRHSTD SRYTLQMVFG QSVVCEWAGN HHERLDGSGY PRGLQGSAID
LPSRIIAIAD VFQALTQARP YRGSMSLNEV MNIMRHEVSC GRLDSQVFDV IVRNSQKYYQ
LSIAESSTEW A
|
|---|
| |