| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0609 |
|---|
| Symbol | |
|---|
| ID | 5134269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 664079 |
|---|
| End bp | 665620 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640530931 |
|---|
| Product | sodium/solute symporter |
|---|
| Protein accession | YP_001215448 |
|---|
| Protein GI | 147672434 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.952879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTACGT ATTCAACTTT TATTGTTATC GCGATTTATC TCATATTGAC CATACTAATC
AGCTGGTTTG TTAACCAGAG GAGTATTGGG AATACTGATT TTTCAACTGG TGGAAGACAG
TTTGGGTGGT TTACCGCAGG CGTTTCTATT TTAGCGACAT ACATCAGTGC TATGACTTTT
ATTGGTATGC CTGGATGGGT TTATCAATCG GGTATGGAAG CGTTAAACAT CCATTTGAAT
TATCCGATAG TCATTTTTTT CGCAGTTGTA TTTTTTATCC CCGTTTTTTA TCGAATGGGT
TTTACGTCCA TTTATGAATA CTTAGAACAC CGCTTTGGTG TTTATGCTCG AACCATTAAC
TCCGTGGTAT TCATATTGGT TCAATGTATT TCGTCTGGAG TTATTCTTTA TGCTATTGCA
TTGATTTTAA TTCAGATTTT ACCCATATCT ATTGTTGAAG CGATTGTTTA CATCACTTTA
TTTACGGCTT GTTATACCTA TGCTGGTGGT ATCTCGACCG TTATCTGGAC GGATATGTTG
CAGTCAGCAG TATTAATTGC AGGGAGTGTG GCAATCTTCG TTCTACTCCT CCTTCAAGTC
GATGGGGTAC ATGGAGTATC TCGGGAGCAA CTGAATATCA TCAATCTTCA GTTCGATTTG
GGTGTCGACA CCACATTGTG GGCGGGAGTG GTGGCTGTCA GTTTCTTACA CATGAGTGTG
TACGGTACCA ATCAATTGAT CATCCAAAGA ACATTAGCCA CGAGATGTGA AAAAACGGCA
CAAAAGTCGA TGTTACTGTG CGGTTATGGT GCTTTTTTTA TTTACTTCTT TTTCGCTTTG
CTTGGCGTCT TATTGAGCAT TTTTTATCAA GAGCGACATT TTACAAACAG TAATGAAGTG
ATACTTGATT TTGTGTTTCA CCATACAAAC CCTTGGGTGA TAGGTTTAAT TATTTCTGCG
CTAGCTGCGG CGGCAATGTC CACTCTGGAC TCTACCTATA ATTCGATGGC AACCGTTGCG
ACGTTTGATC TTTATCAGCG CTTTATTCGA CGAAATGCAC CTGACCATCA CTATCAAGCG
GTCGCTCGTA AAATGAGTTT GGTGGCCGCA GGCTTAGTGG TGATACCTGC TTTGCTCGCG
GTATCGAATG AGTCAGTGCT TAAAACGATC GCGAGTTTAA CCTCGATTTT TGTTGGTATC
CGCCTAGGCT CATTTGTTCT TGGTCTTTTT TCAAATCAAG CCAATGAGAA AGGAGTTATC
GCCGGCAGCA TAATCAGTAT CGCCGCCGTG CTTGGCGCTA GACTCATGGA TATTGCTTGG
CCTTGGTTTG CTCCTATAGG AACCGTGTTT TTCTTGGTAT CCGGAGTGGT GATAAGCCGA
TACTGGGGCG ATAATTCTAT TCAACAGCAA GCGTTTATTG CGCGTCAGAA GCATCTCTTC
GCAACGCCGA CGATGAGCCA GTATGGTTTG TTGGTTTTCG CGGCTGTGAC AATTGCGGTT
TGTGCCATCA TACCTGATTG GCTTTATAAC GCTTTATCTT AA
|
|---|
| Protein sequence | MVTYSTFIVI AIYLILTILI SWFVNQRSIG NTDFSTGGRQ FGWFTAGVSI LATYISAMTF
IGMPGWVYQS GMEALNIHLN YPIVIFFAVV FFIPVFYRMG FTSIYEYLEH RFGVYARTIN
SVVFILVQCI SSGVILYAIA LILIQILPIS IVEAIVYITL FTACYTYAGG ISTVIWTDML
QSAVLIAGSV AIFVLLLLQV DGVHGVSREQ LNIINLQFDL GVDTTLWAGV VAVSFLHMSV
YGTNQLIIQR TLATRCEKTA QKSMLLCGYG AFFIYFFFAL LGVLLSIFYQ ERHFTNSNEV
ILDFVFHHTN PWVIGLIISA LAAAAMSTLD STYNSMATVA TFDLYQRFIR RNAPDHHYQA
VARKMSLVAA GLVVIPALLA VSNESVLKTI ASLTSIFVGI RLGSFVLGLF SNQANEKGVI
AGSIISIAAV LGARLMDIAW PWFAPIGTVF FLVSGVVISR YWGDNSIQQQ AFIARQKHLF
ATPTMSQYGL LVFAAVTIAV CAIIPDWLYN ALS
|
|---|
| |