| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0599 |
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| Symbol | cscA |
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| ID | 5134272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 650363 |
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| End bp | 652003 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640530921 |
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| Product | sucrose-6-phosphate dehydrogenase |
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| Protein accession | YP_001215438 |
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| Protein GI | 147671919 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1621] Beta-fructosidases (levanase/invertase) |
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| TIGRFAM ID | [TIGR01322] sucrose-6-phosphate hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.351504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTATTAG ATACGCTGCT CGAACTCGCG GGTGGAATAA ACAATGTCAC GCGCATTTTA
GCTCCACAGG GGCAAGTGGT TTTGGCACTA AAACATCCCC CGCATGCCCC TCACCTTCCT
GATGATGTGA GTTTGCAATC GGTACTCGGA GAGTGGCAAC TCTCTGTCCA ACGCACTGCT
GAAGTGTCCG ATCAGCAACT CGCCGCGATA GGTAAAGCAA TTGCCGAGCG CCAAAAGCGG
GCAACGCTCC CTTATCAAAC AGCCTTAGAC TGCCCTTATC GGCCCCAGTG GCATATCTCA
CCACCACAGG GCTTACTCAA CGACCCCAAC GGCTTTATTT ATCATCAAGA GGAATACCAC
CTCTTTTATC AATGGCATCC TTTCGCTTGC GAACACAAAG ATAAATACTG GGTGCATCTT
AAGAGCCTCG ATTTAGTCCA TTGGCAGTGG CAGTCGGTCG CCCTAACACC TTCGGATTGG
TTTGATAGTC ACGGGGTATT TTCAGGTCAT GCGGTCAGCC ATCAACAAGA TTTGTGGCTT
TTCTATACCG GCAACACGCG CTTAGGTACA GAGCGCCAAC GCCAAACCAT GCAGTGCGCC
GCACGCATGA ACGCCAATGG TGAGTTTGAA AAATTAGGAC CTGTGATTCG GTGTTTACCT
GAAGGCGTGA CCGAACATAT CCGCGATCCT AAAGTGATTT ACACCCAAGG AAAGTGGCAG
ATGTTGCTTG GTGCGCAAAC GCTCGCTCAT CAAGGGCGAC TGGCGGTCTA CCACTCAGAT
GACTTACTCC ATTGGCATTT CGATAAGCTC TATGGCGATG AACTCGGCGA TTACGGGTAT
ATGTGGGAGT GTCCTGACTG GTTTGAACTG CAAGGTGAAG CGTTTTTTGT GTTCGGGCCA
CAAGGCATCG CATCGGCGAA TCCTCATCAC ACCATTGAAC ATCAAAATCG GATCTTTCGA
GCGACCCAGA ATGCACAAGG CGAAATAGCG TTACTGCAGG GTTGGCCACT GGATGAAGGC
TTTGATTTTT ATGCACCGCA AACCGCGCAA ACTGCCGATG GACGGCGAGT ATTGTGTGGC
TGGATGGGGC TACCCGATGA AACGCAGCAC CCTAGCTGTG ACCAAGGCTG GATTCATCAA
CTGACCGCAC TCCGTGAACT AGAGTGGCGT GAAGGCAAGA TTTATCAGCA CCCATTGCGT
GAACTCGACA CACTGCAAAG TGAACCGCAC ACCTTGCTTT TGAGTGACAC CGTCACTGAG
CTAAAAACCA AGAGCTTTGA TCTGCAAGTG ACTCTGCCTT GGGGATGTGA GCTACGCTTG
ATGCAAAATG CGCAGTATTG CGTCACGCTA ACGTTAGATG CAGAAAATCG ACTATTACGC
CTCGATCGCT CTGCAACTCA AATTCGCCAA GGGGACACCA TTCGGGAGCT GAAGCTCGAT
AGCCCAACGG TTGAGCTGCG CATCTTGGCT GATCAATCCT CATTAGAGAT TTTCATCAAT
CAAGGCGAAC ATGTGATGAC CAGCCGCATC TTTACTCCAC TGGATGCAAC CGGTATTTCA
TTGCATGGCG CGAGCGTAGA CGCAAAGCTG TACTACATGG CTCCTGCATC TGCGCCATTT
AACCTAGAAG TGAATGTGTA G
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| Protein sequence | MLLDTLLELA GGINNVTRIL APQGQVVLAL KHPPHAPHLP DDVSLQSVLG EWQLSVQRTA
EVSDQQLAAI GKAIAERQKR ATLPYQTALD CPYRPQWHIS PPQGLLNDPN GFIYHQEEYH
LFYQWHPFAC EHKDKYWVHL KSLDLVHWQW QSVALTPSDW FDSHGVFSGH AVSHQQDLWL
FYTGNTRLGT ERQRQTMQCA ARMNANGEFE KLGPVIRCLP EGVTEHIRDP KVIYTQGKWQ
MLLGAQTLAH QGRLAVYHSD DLLHWHFDKL YGDELGDYGY MWECPDWFEL QGEAFFVFGP
QGIASANPHH TIEHQNRIFR ATQNAQGEIA LLQGWPLDEG FDFYAPQTAQ TADGRRVLCG
WMGLPDETQH PSCDQGWIHQ LTALRELEWR EGKIYQHPLR ELDTLQSEPH TLLLSDTVTE
LKTKSFDLQV TLPWGCELRL MQNAQYCVTL TLDAENRLLR LDRSATQIRQ GDTIRELKLD
SPTVELRILA DQSSLEIFIN QGEHVMTSRI FTPLDATGIS LHGASVDAKL YYMAPASAPF
NLEVNV
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