| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0597 |
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| Symbol | scrA |
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| ID | 5133948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 647558 |
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| End bp | 648997 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640530919 |
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| Product | PTS system, sucrose-specific IIBC component |
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| Protein accession | YP_001215436 |
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| Protein GI | 147672174 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific |
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| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component
[TIGR00852] PTS system, maltose and glucose-specific subfamily, IIC component
[TIGR01996] PTS system, sucrose-specific IIBC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000000306243 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACTATC CAGTCATAGC AAAACAACTT CTTGAGAGCT TGGGTGGCAA AAGTAATATC
CAAGCACTCG CGCACTGCGC GACTCGTTTA CGCTTAGTGC TTAACGATGA AACGCAAATT
AATGAGGGCG TCATTGAATC ACTGCAAGGT GTCAAAGGAC AATTTAAGGT CGCAGGGCAG
TATCAAATCA TTTTCGGCTC AGGCATTGTC AACCAAGTCT ATGCTGAGAT GGCGAAATTG
ACCGGTTTGG TTGAGATGTC AACCAATGAT GTCGCTTCCG CGGGTGCCGA GAAACAGAAT
TGGGTACAGC GCGCAGTAAA GGGATTGTCC GATATTTTTG TCCCTATCAT CCCCGCGATC
GTGGCCGGTG GTTTATTGAT GGGGCTGTTC AACGTATTGA CTGCACCGGG ACTGTTTATT
GAAGGCCAAT CTTTGATTGA TGCCAATCCG GGATTGGCTG ATCTCGCGAG CATGATCAAC
ACCTTCGCGA ATGCCCCTTT TGTCTATTTA CCCGTATTGT TGGCTTTTTC TGCCTCGCGC
AAGTTTGGCG GCAACCCCTT TTTGGGCGCT GCGCTGGGTA TGCTGATGGT GCATCCCGAT
CTCTTAAACG GCTGGGGGTT TGGCAGTGCA TCCGTATCTG GCACTGTTCC AACTTGGAAT
ATTCTCGGTT TTGAAATCGA AAAAGTCGGT TATCAAGGCT CGGTATTGCC CGTGCTGGTT
TCCACTTACA TTCTGGCCAA AATTGAAAAT GGCTTACGCA AAATCGTACC GTCCGTACTG
GATAACTTGC TTACCCCAAT GCTGGCGATT TTTATCACGG GTTTTCTGAC CTTTACTTTG
GTCGGACCGC TAACGCGTGA TATCGGCTTC ATGTTGGGAG ATGCACTGAA CTGGCTGTAC
GATTCGGCAG GGTTTGTCGG TGGCGCACTG TTTGGCTTTA TCTATGCTCC TTTTGTGATC
ACTGGGATGC ACCATAGCTT TATTGCGATA GAAACTCAGC TACTTGCCGA TATCGTGACT
ACAGGTGGTA CCTTTATTTT CCCTATCGCT GCGATGTCTA ACATTGCGCA GGGTGCCGCG
GCTTTAGCTG TGGGTGTGAT GACGAAAGAG ACCAAACTCA AAGGGGTTGC GATTCCTTCG
GGTGTGACCG CGTTGCTGGG GATCACTGAA CCTGCCATGT TTGGCGTGAA TTTGAAATTG
CGTTATCCGT TTATTGCTGC CATCTGTGGT GCGGCTTTAG CCAGTGCTTT CATCACCTTA
TTCAATGTAA AAGCCCAAGC GCTAGGCGCG GCTGGTTTGC CAGGGATCAT TTCGATTAAT
CCACAGCAAA TTGGTTACTA CATCATGGGT ATGGCGATCT CATTTGTGGC CGCCTTTGCG
TTGACTGTCG TGCTTGCGAT GCGTGAAAAA AACAAACAAG CGGCTCAGGT CACCGCGTAA
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| Protein sequence | MDYPVIAKQL LESLGGKSNI QALAHCATRL RLVLNDETQI NEGVIESLQG VKGQFKVAGQ
YQIIFGSGIV NQVYAEMAKL TGLVEMSTND VASAGAEKQN WVQRAVKGLS DIFVPIIPAI
VAGGLLMGLF NVLTAPGLFI EGQSLIDANP GLADLASMIN TFANAPFVYL PVLLAFSASR
KFGGNPFLGA ALGMLMVHPD LLNGWGFGSA SVSGTVPTWN ILGFEIEKVG YQGSVLPVLV
STYILAKIEN GLRKIVPSVL DNLLTPMLAI FITGFLTFTL VGPLTRDIGF MLGDALNWLY
DSAGFVGGAL FGFIYAPFVI TGMHHSFIAI ETQLLADIVT TGGTFIFPIA AMSNIAQGAA
ALAVGVMTKE TKLKGVAIPS GVTALLGITE PAMFGVNLKL RYPFIAAICG AALASAFITL
FNVKAQALGA AGLPGIISIN PQQIGYYIMG MAISFVAAFA LTVVLAMREK NKQAAQVTA
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