| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0583 |
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| Symbol | |
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| ID | 5134664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 636357 |
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| End bp | 637361 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640530905 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_001215422 |
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| Protein GI | 147671525 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 48 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCGT TAAGTTGGAG TATCGCACTG GTGCTTGCCA GTTCGGCCTA TGCTCAAAAT
CAAGACAGTA ACGAACGGTT TACCGTGAAA ACAGAGTCGA TCTCGCAGAT AGTCGAATTG
GACGGTGTGG TGCAGCCGGT CAATCAAGGC TCGTTAGCCG CGCAAACCTC AGGGCGAGTG
GTTGGCTTAT ACGTCGATGT GAATGATTTC GTAAAAAAAG ATCAGGTGCT TTTGGAGATC
TCGGCGGTTC AGCAATCGGC CGCATTGGAT GCCGCGCAAG CTCAATTGGC GAGTGCCACG
GCACAAAACC GTGAAGCACA AGCCCAGCTC AATCGTTATC GTCAACTGTT CCCCAAAGGC
GCGATTTCCA AAGATCAAAT GGACAGCGCC GAAGCGCGTG CACGCAGTAC CGATGCCGCA
GTGAAATCGG CACAAGCGGC GGTCGAACAA GCCAAAGAAT CGCTAGGTTA CACCAACATC
ACTGCACCTT ATGATGGCAT TGTTACCCAG CGCATGGTGG AACTGGGTGA AACTGTTGCA
CCGGGCACAC CCCTGCTCCG CGGTTTTTCG CTCGATGAAT TACGGGTTGA AACAGAAATT
CCGCAGCGTT ATCAGCCTTA TGTGGCAGAT GTCTCTCAAT TTACCGTGCG CACTGCGCAA
GGTGAGCAGC TGAAACCCGT CGAATTTAGC TTATTTAGCT ACGCCGATCC GCAATCGCAC
ACCTTTAAAA CTCGCCTTGA GCTGCCGCAA AACAGCGCTG CTCTGGTGCC GGGTATGTGG
GTAAAAACCG AATTTAACTA TGGTCAGCGT GAAGTCTTAG TGGTGCCGAG CAGCGCTGTG
TTACGTCGTG CCGAATTGAG CGCGGTGTAC CGAGTCAATA ACGGCCAACG TGCACTGAAT
CCTGTACGTT TGGGGCAAGT CTATGGTGAC TACGTTGAAG TGCTTTCTGG ACTTGAACTA
GGTGATGTGG TCGCTACACA GGCCGTCACA GCAAAAGGTG AATGA
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| Protein sequence | MKALSWSIAL VLASSAYAQN QDSNERFTVK TESISQIVEL DGVVQPVNQG SLAAQTSGRV
VGLYVDVNDF VKKDQVLLEI SAVQQSAALD AAQAQLASAT AQNREAQAQL NRYRQLFPKG
AISKDQMDSA EARARSTDAA VKSAQAAVEQ AKESLGYTNI TAPYDGIVTQ RMVELGETVA
PGTPLLRGFS LDELRVETEI PQRYQPYVAD VSQFTVRTAQ GEQLKPVEFS LFSYADPQSH
TFKTRLELPQ NSAALVPGMW VKTEFNYGQR EVLVVPSSAV LRRAELSAVY RVNNGQRALN
PVRLGQVYGD YVEVLSGLEL GDVVATQAVT AKGE
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