Gene VC0395_0565 details

Gene Information

• Locus tag: VC0395_0565
• Symbol: tktA-2
• ID: 5134628
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: +
• Start bp: 618853
• End bp: 620895
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 640530887
• Product: transketolase
• Protein accession: YP_001215404
• Protein GI: 147671641
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0021] Transketolase
• TIGRFAM ID: [TIGR00232] transketolase, bacterial and yeast

Plasmid Coverage information

• Num covering plasmid clones: 37
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTTGAACG CACTCCGTTC AACCTCCTTT ATTGAAATGA GTAACACTAT GAATCGCAAA 
CAACTTGCCA ATGCTATCCG CGCCCTGAGC ATGGACGGCG TTCAAAAAGC TAACTCTGGT 
CACCCGGGAG CCCCAATGGG CATGGCGGAT ATCGCCGAAG TGCTGTGGCG TTCACACTTA 
AACCACAACC CACAAAACCC AAATTGGGCT GACCGCGACC GTTTCGTACT GTCTAACGGC 
CACGGCTCTA TGCTGATTTA CTCGCTGCTA CACCTGAGCG GCTATGAGCT GTCGATTGAC 
GATTTGAAAA ACTTCCGTCA ACTACACTCC AAAACACCGG GTCACCCAGA GTACGGTTAT 
GCACCGGGCA TCGAAACGAC TACGGGCCCA CTCGGCCAAG GCATCACCAA TGCCGTAGGT 
ATGGCGATTG CTGAAAAAGC TCTGGCGGCG CAGTTCAACA AACCGGGTCA CGACATCGTT 
GACCACTTCA CTTATGTGTT TATGGGTGAC GGTTGTTTGA TGGAAGGCAT TTCGCACGAA 
GCGTGTTCAC TGGCGGGCAC ACTTGGCCTT GGCAAACTGA TTGCGTTCTG GGATGACAAC 
GGTATTTCTA TTGATGGTCA CGTGGAAGGC TGGTTCTCAG ACGACACGCC AAAACGTTTT 
GAAGCGTACG GCTGGCATGT TATCCCTGCG GTTGATGGCC ACGATGCAGA TGCGATTAAC 
GCTGCGATTG AAGCCGCGAA AGCAGAAACC TCTCGCCCAA CGCTGATTTG TACCAAAACC 
ATCATCGGTT TCGGCTCACC AAACAAAGCG GGTTCACACG ACTGTCACGG CGCACCTCTG 
GGCAACGATG AAATCAAAGC CGCGCGTGAA TTCTTGGGTT GGGAATACGC TCCGTTTGAA 
ATCCCGGCTG ACATCTACGC AGCGTGGGAT GCAAAACAAG CAGGCGCAAG CAAAGAAGCC 
GCTTGGAATG AGAAATTCGC CGCTTACGCG AAAGCTTACC CAGCCGAAGC TGCTGAATAC 
AAACGCCGCG TAGCGGGCGA GCTGCCAGCG AATTGGGAAG CCGCAACCAG CGAGATTATC 
GCTAACCTGC AAGCTAACCC TGCCAACATC GCATCGCGTA AAGCATCACA AAATGCGCTG 
GAAGCGTTCG GCAAACTGCT GCCAGAATTT ATGGGTGGTT CTGCTGACTT GGCGCCTTCT 
AACCTCACCA TGTGGTCTGG CTCTAAGTCA CTGACAGCAG AAGATGCGTC AGGCAACTAC 
ATCCACTACG GTGTGCGTGA GTTTGGTATG ACGGCCATCA TCAACGGTAT CGCGCTGCAC 
GGCGGTTTTG TCCCTTACGG TGCAACCTTC CTGATGTTTA TGGAATACGC GCGTAACGCG 
ATGCGTATGG CAGCACTGAT GAAAGTGCAA AATATCCAAG TGTACACGCA TGACTCTATC 
GGTCTGGGTG AAGATGGCCC AACTCACCAA CCAGTTGAGC AAATCGCTTC TCTGCGTATG 
ACACCAAACA TGAGCACATG GCGCCCATGT GACCAAGTGG AATCGGCAGT GGCTTGGAAA 
CTGGCCATCG AGCGTAAAGA TGCGCCATCT GCGCTGATTT TCTCGCGTCA AAACCTTGCG 
CAGCAACCAC GCAGCGCAGA GCAAGTCGCG AACATCGCTA AAGGCGGTTA CATCCTGAAA 
GATTGTGCAG GCCAACCTGA GCTAATTCTG ATTGCAACAG GCTCTGAAGT GGAACTGGCG 
GTTGCCGCTT ACGAGCAACT GAGCGCCGAA GGCAAAGCGG TTCGCGTGGT CTCTATGCCA 
TCGACCGACG CATTTGATAA GCAAGATGCC GCTTACCGCG AAGCCGTTCT GCCAGCGGCA 
GTCACCAAGC GTATCGCGAT TGAAGCGGGT ATTGCAGACT TCTGGTACAA GTACGTCGGC 
TTTGGCGGTC GCATCATCGG TATGACCAGC TTCGGCGAAT CAGCACCAGC CGGTGAGCTG 
TTCAAACTGT TTGGTTTCAC GACTGAAAAC GTAGTGAAAC AAGCCAAAGA ACTGCTGGCG 
TAA 

 

Protein sequence

MLNALRSTSF IEMSNTMNRK QLANAIRALS MDGVQKANSG HPGAPMGMAD IAEVLWRSHL 
NHNPQNPNWA DRDRFVLSNG HGSMLIYSLL HLSGYELSID DLKNFRQLHS KTPGHPEYGY 
APGIETTTGP LGQGITNAVG MAIAEKALAA QFNKPGHDIV DHFTYVFMGD GCLMEGISHE 
ACSLAGTLGL GKLIAFWDDN GISIDGHVEG WFSDDTPKRF EAYGWHVIPA VDGHDADAIN 
AAIEAAKAET SRPTLICTKT IIGFGSPNKA GSHDCHGAPL GNDEIKAARE FLGWEYAPFE 
IPADIYAAWD AKQAGASKEA AWNEKFAAYA KAYPAEAAEY KRRVAGELPA NWEAATSEII 
ANLQANPANI ASRKASQNAL EAFGKLLPEF MGGSADLAPS NLTMWSGSKS LTAEDASGNY 
IHYGVREFGM TAIINGIALH GGFVPYGATF LMFMEYARNA MRMAALMKVQ NIQVYTHDSI 
GLGEDGPTHQ PVEQIASLRM TPNMSTWRPC DQVESAVAWK LAIERKDAPS ALIFSRQNLA 
QQPRSAEQVA NIAKGGYILK DCAGQPELIL IATGSEVELA VAAYEQLSAE GKAVRVVSMP 
STDAFDKQDA AYREAVLPAA VTKRIAIEAG IADFWYKYVG FGGRIIGMTS FGESAPAGEL 
FKLFGFTTEN VVKQAKELLA