| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0563 |
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| Symbol | |
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| ID | 5134213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 616278 |
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| End bp | 617273 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640530885 |
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| Product | SorC family transcriptional regulator |
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| Protein accession | YP_001215402 |
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| Protein GI | 147671545 |
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| COG category | [K] Transcription |
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| COG ID | [COG2390] Transcriptional regulator, contains sigma factor-related N-terminal domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAA TTCCAGAGAT TTCGGTTGAA AGTACCGATC TGCTGACTGA AATCGCCGTC
TCTTATTATC AAGATGGCGC AACACAGGAA GAGATTTCCA AAAAATACAC CATTTCACGC
GCCAAAGTGG GGCGGTTGCT CAAGCAAGCC CGTGATGAGG GGATTGTTGA AATTACTGTG
AAATACCATC CGGTGTTCAG CGCCAAAATC GAGCAGCGCT TGATTGAGCG TTTTGGTGTG
CGCCGCGCCT TGATTGCCCT TGATCAACCC AATGATGAAG CGCAGCGCCA ACAAGTTGCA
GGTTTGGTAT CCAACTATCT TACCAGCACG CTAAAAAACG GCATGGTAGT GACGGTTGGA
CAGGGGCGTA ATGTGTCAGC CGTAGCGCAT CATGTTGGGG TGATCACGCC GCGAGATTGT
AAATTTGTGT GCAGCATCGG CGGCATTCAC CCACGCGGCG GTATGTTTAA CGCTGACCAT
ATTTGTCGTC AACTCGCAAA AAAATACGGC GGCAGCTCGG AAACCTTGTA CGCGCCGGCC
TACGCAGAAA ACCCGGAGCA GAAACGGGTT TTCATGCAAA ACAGTACGGT GAAGCAAACC
CTCGATCTTG CTCGTAAAGC GGATATCGCA CTGGTCGGAA TTGGCGATAT GAGTGAAAAC
AGCTACATGG TTGATCTTGG CTGGTTTACG CCGGAAGAGG TGGTGCAATC ACGCCTGAAT
CAAGGTGTGG TCGGTGATTT CGCCGGGCAT GACTTTTTTG ATGTGCATGG ACGTATCGCG
AATACCGTGA TGAATGATCG CGTGATTGGC TTGGGGATTG ACGAGTTCCG CCCAATTGCT
GAAGTGATCG CAATTGCCGC AGAAAACAGT AAACCGCTTG CTCTTTTGGG TGCACTGCGC
ACCGGCGCGA TTGATGTGAT CGCGACCAGT GTGAGTAACG CTTTGACCGT GCTCAACTTA
GATGAGCAGA TGCAAACGGC ATTATCTGCG TCTTAA
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| Protein sequence | MSQIPEISVE STDLLTEIAV SYYQDGATQE EISKKYTISR AKVGRLLKQA RDEGIVEITV
KYHPVFSAKI EQRLIERFGV RRALIALDQP NDEAQRQQVA GLVSNYLTST LKNGMVVTVG
QGRNVSAVAH HVGVITPRDC KFVCSIGGIH PRGGMFNADH ICRQLAKKYG GSSETLYAPA
YAENPEQKRV FMQNSTVKQT LDLARKADIA LVGIGDMSEN SYMVDLGWFT PEEVVQSRLN
QGVVGDFAGH DFFDVHGRIA NTVMNDRVIG LGIDEFRPIA EVIAIAAENS KPLALLGALR
TGAIDVIATS VSNALTVLNL DEQMQTALSA S
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