Gene VC0395_0554 details

Gene Information

• Locus tag: VC0395_0554
• Symbol: mscL
• ID: 5134797
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: +
• Start bp: 608061
• End bp: 608471
• Gene Length: 411 bp
• Protein Length: 136 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640530876
• Product: large-conductance mechanosensitive channel
• Protein accession: YP_001215393
• Protein GI: 147671843
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.000110723
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTTAC TTAAAGAGTT CAAGGCATTT GCATCTCGTG GCAATGTGAT CGACATGGCA 
GTCGGTATCA TCATTGGTGC GGCGTTTGGC AAAATAGTGT CATCGTTCGT GGCCGATATC 
ATTATGCCGC CAATCGGTAT TATTTTAGGT GGTGTGAATT TTAGCGATCT GAGTTTCGTG 
TTACTTGCCG CGCAAGGTGA TGCCCCTGCT GTAGTGATTG CCTACGGCAA ATTTATCCAA 
ACCGTGGTCG ATTTTACGAT TATCGCGTTC GCCATTTTCA TGGGTTTAAA AGCGATCAAT 
AGCTTGAAGC GTAAGGAAGA AGAAGCGCCT AAAGCCCCAC CTGCGCCAAC CAAAGATCAA 
GAACTGCTTT CTGAAATTCG TGATTTGTTA AAAGCACAGC AAGATAAATA A 

 

Protein sequence

MSLLKEFKAF ASRGNVIDMA VGIIIGAAFG KIVSSFVADI IMPPIGIILG GVNFSDLSFV 
LLAAQGDAPA VVIAYGKFIQ TVVDFTIIAF AIFMGLKAIN SLKRKEEEAP KAPPAPTKDQ 
ELLSEIRDLL KAQQDK