| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0534 |
|---|
| Symbol | |
|---|
| ID | 5134446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 588154 |
|---|
| End bp | 589236 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640530856 |
|---|
| Product | putative peptide ABC transporter, permease protein |
|---|
| Protein accession | YP_001215373 |
|---|
| Protein GI | 147672401 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4174] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGTT ATATTCTGCG CCGTTTGTTA CTGGTGGTGC CCACATTGTG GGCCATCATC
ACCATTAACT TTTTTATTAT TCAGATTGCT CCTGGGGGCC CAGTAGAGCA GGCCATTGCT
CAGTTGGAAG GTAACACCTC CGGCGTCATG GAGCGTTTTA CGGGAGGCGG GCAAGAAGTC
GCGGCGCCGA CGGATGCGTC GGTTTCTGGT TATAAAGGTT CACGTGGACT TGATCCGCAA
GTGGTCGAAG AGATCACCCG TCGTTTTGGC TTTGATAAGC CCATCCATGA ACGCTATTTC
CAGATGCTTA AGGATTACGC CACGTTTAAT TTTGGCGAAA GCTTATTTCG TGGCGGCGAT
GTGATTGACT TGATTGTGGA GCGATTACCG GTTTCCATTT CCCTCGGATT GTGGAGCACG
CTGCTGATCT ATCTGATTTC GATTCCTTTG GGGATCAGCA AAGCGATTCA TCACGGCTCG
CGTTTTGATG TTTGGTCGAG TGCGGTGGTG ATCATTGGCT ACGCTATCCC CGGATTTCTG
TTTGCGATCA TCTTGATTAT CCTCTTTGCC AGCGGCAACT ATTTCAGTTG GTTTCCGCTG
CGCGGTTTAG TTTCCGATAA CTTCGCCAGC TTGCCTTGGT ATCAACAAGT GCTCGATTAC
TTTTGGCACC TCACGTTACC CACATTAGCC ATGGTCATTG GCGGTTTTGC TACGTTAAGC
ATGCTCACCA AAAACTCGTT TTTAGATGAG ATTAACAAGC AATATGTGGT CACCGCGCGC
GCGAAGGGGT TGGATGAACG GCGCATTCTC TACAAACATG TGTTTCGTAA TGCCATGTTG
ATCATCATTG CCGGATTTCC GAGCGCATTT ATCAGCATCT TCTTCACGGG TTCGATGTTG
ATTGAAGTGA TGTTCTCGCT GGAAGGTATT GGTCTACTTG GCTTTGAAGC CACTATCCAA
CGTGATTATC CTTTGGTATT TAGTTCGTTG TATATCATGA CATTGCTCGG GTTGTTGCTC
AGCATCATTT CAGATTTGAC TTACATGTGG GTTGACCCAC GCATTGATTT TGAGGCTCGT
TGA
|
|---|
| Protein sequence | MLSYILRRLL LVVPTLWAII TINFFIIQIA PGGPVEQAIA QLEGNTSGVM ERFTGGGQEV
AAPTDASVSG YKGSRGLDPQ VVEEITRRFG FDKPIHERYF QMLKDYATFN FGESLFRGGD
VIDLIVERLP VSISLGLWST LLIYLISIPL GISKAIHHGS RFDVWSSAVV IIGYAIPGFL
FAIILIILFA SGNYFSWFPL RGLVSDNFAS LPWYQQVLDY FWHLTLPTLA MVIGGFATLS
MLTKNSFLDE INKQYVVTAR AKGLDERRIL YKHVFRNAML IIIAGFPSAF ISIFFTGSML
IEVMFSLEGI GLLGFEATIQ RDYPLVFSSL YIMTLLGLLL SIISDLTYMW VDPRIDFEAR
|
|---|
| |