Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0525 |
Symbol | |
ID | 5134359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 580676 |
End bp | 581467 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640530847 |
Product | putative lipoprotein |
Protein accession | YP_001215364 |
Protein GI | 147672157 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGA CGCAACTGGC GCTCACTTTA TTAATGACTC TTGGCTTAGC GGCATGCAGC GCTTCACCGA CAGGCCGAAA TCAATTGCTA CTGTTTTCTG ACAACGACAT GAGTCAGCTT GGCGCGAAGT CTTTCACGCA GATGAAACAG GAAATTCCAA TCAGTAAAGA TGCAAAAACC AATGCGTATG TGCAGTGTGT AACCAAAGCG ATTACCGCTC AAGTACCCAA GCAAAGTAGT TTTGAGCAAT GGGAAGTGGT CGTGTTTGAG AGTGACCAAG TTAACGCGTT TGCCTTGCCG GGTGGGAAAA TTGGGGTATA CACGGGTCTA CTGAAGGTTG CGGTGAATCA GGACCAGTTA GCGACCGTGA TTGGCCATGA AATCGCTCAT GTGCTGTCAA ACCACAGTAA TGAGCGTTTA TCGCAATCAC AATTAGCGCA TGCCGGCTTA CAACTGACGG ATATCGCAAT TGGGGCATCT GAATATGCGC AATATCGTAA TCTGACCATG TCCGCGCTCG GCGTTGGTGT GCAATACGGG GTAATTTTGC CCTATGGCCG CAGCCAAGAG TCAGAAGCCG ATATATTAGG ATTGGCCTTG ATGGCAAGAG CAGGCTTTGA TCCTTATCAG AGCATTGAGC TTTGGAAAAA TATGGCCAAA GCGTCTGGAG GAAAACAGCC GCCTGAGCTG CTTTCGACCC ACCCATCACA CAGCACCCGT ATCAGCGATT TGAGTGCAAC GATCAGTACA CTGCCACCAC ATCAAGGTTC TAAAGCTCAG TGTGCTCTCT AG
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Protein sequence | MKKTQLALTL LMTLGLAACS ASPTGRNQLL LFSDNDMSQL GAKSFTQMKQ EIPISKDAKT NAYVQCVTKA ITAQVPKQSS FEQWEVVVFE SDQVNAFALP GGKIGVYTGL LKVAVNQDQL ATVIGHEIAH VLSNHSNERL SQSQLAHAGL QLTDIAIGAS EYAQYRNLTM SALGVGVQYG VILPYGRSQE SEADILGLAL MARAGFDPYQ SIELWKNMAK ASGGKQPPEL LSTHPSHSTR ISDLSATIST LPPHQGSKAQ CAL
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