Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0518 |
Symbol | |
ID | 5134454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 573485 |
End bp | 574372 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640530840 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001215357 |
Protein GI | 147671936 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.29025 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTTAAGTC CAATCACTCT TGAAGCGCTG CATATTTTGG ATGCAATTGA GCGTAGAGGC AGCTTTGCAG CCGCAGCTAA TGAGCTTAAT CGAGCACCGA GTTCATTGAG CTATCAAATC CAAAAGCTTG AACAGGATTT GGATTTGATG ATCTTTGATC GCTCCGGTCA TCGAGCCAAT TTTACTGAAG CGGGCAAACT TATCTTAGAG CGGGGCAGGG CCATCTTGGC TGCGACCGAA AAATTGGTCA ATGATGCTAC GTTACTGGCT AATGGCTGGG AGCTCGATAT CACGATTGCA CTGGATGGCA TTGTGCCCGC AGCGAATCTT TTTCCTATGG TTGAAGCACT GGGTAACATC AGTAAAACGC GAGTGCGCAT TCAAGATGAA ATTTTGGCGG GTTGCTGGGA AGCCTTAGCG ACGGGGCGTG CGGATTTGTT GATCTGCCCG CGCATCGAAG CCTTACCACA GGATGTGAAA GCAGAAACCA TTGGCACGAT GAAAATGATC TGGGTTGCCG CGCCGACACA CTATGTGCAT CGTCGTTCGG GGGAGTTTAA TGAAGAGGCC AGAGAAAAGT ATCGTGCTAT TGCCATTGCC GATACGGCTC GTGAACAGCC AGCAATGAGT GTAAACATTC TGCAGCGTCA ACCTCGCTTA ACGGTCAGTA ATTTGGACGC AAAATGCAAA GCGTTAGTGG CGGGCTTAGG GATTGGTACT CTGCCATTGC AAGTGGCTCA ACCTTATATT GATAAAGGTG AACTAAAAGC TATTCATGGT TCTGAAGATC TAGAGATGGA TATCGTACTT GCCTGGCGAC GTAACCAGAT GGGTGAAGCC AAATCTTGGT GTATTCAATA CCTGAAGAAG AATTGGCGCT GGGAGTAG
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Protein sequence | MLSPITLEAL HILDAIERRG SFAAAANELN RAPSSLSYQI QKLEQDLDLM IFDRSGHRAN FTEAGKLILE RGRAILAATE KLVNDATLLA NGWELDITIA LDGIVPAANL FPMVEALGNI SKTRVRIQDE ILAGCWEALA TGRADLLICP RIEALPQDVK AETIGTMKMI WVAAPTHYVH RRSGEFNEEA REKYRAIAIA DTAREQPAMS VNILQRQPRL TVSNLDAKCK ALVAGLGIGT LPLQVAQPYI DKGELKAIHG SEDLEMDIVL AWRRNQMGEA KSWCIQYLKK NWRWE
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